RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 C1orf115Q9H7X2 142 aa13.69□□□□□ -0.22
PTPRF-203ENST00000372407 HMGN5P82970 282 aaKnown RBP13.69□□□□□ -0.22
PTPRF-203ENST00000372407 CCDC184Q52MB2 194 aa13.69□□□□□ -0.22
PTPRF-203ENST00000372407 CCDC27Q2M243 656 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 ACBD3Q9H3P7 528 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 FIBPO43427 364 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 XBP1P17861 261 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 ESCO1Q5FWF5 840 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 NUTM2GQ5VZR2 741 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 CCDC173Q0VFZ6 552 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 MVPQ14764 893 aaKnown RBP13.68□□□□□ -0.22
PTPRF-203ENST00000372407 HSP90B2PQ58FF3 399 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 TRIM34Q9BYJ4 488 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 TSPY26PQ9H489 355 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 ANKRD30BQ9BXX2 1392 aa13.68□□□□□ -0.22
PTPRF-203ENST00000372407 TRAPPC8Q9Y2L5 1435 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 SLC4A2P04920 1241 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 IDI1Q13907 227 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 ERC1Q8IUD2 1116 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 PRAM1Q96QH2 718 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 TCEAL9Q9UHQ7 104 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 NAIPQ13075 1403 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 TNRQ92752 1358 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 SYCP2Q9BX26 1530 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 HDGFL1Q5TGJ6 251 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 ZNF428Q96B54 188 aa13.67□□□□□ -0.22
PTPRF-203ENST00000372407 CCT4P50991 539 aaKnown RBP13.66□□□□□ -0.22
PTPRF-203ENST00000372407 PIP4K2BP78356 416 aa13.66□□□□□ -0.22
PTPRF-203ENST00000372407 BRMS1Q9HCU9 246 aa13.66□□□□□ -0.22
PTPRF-203ENST00000372407 PLEKHO1Q53GL0 409 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-203ENST00000372407 CIZ1Q9ULV3 898 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-203ENST00000372407 K7ELQ4 463 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-203ENST00000372407 SART3Q15020 963 aaKnown RBP13.66□□□□□ -0.22
PTPRF-203ENST00000372407 SULT6B1Q6IMI4 303 aa13.66□□□□□ -0.22
PTPRF-203ENST00000372407 GPRASP1Q5JY77 1395 aa13.66□□□□□ -0.22
PTPRF-203ENST00000372407 PRM3Q9NNZ6 103 aa13.65□□□□□ -0.22
PTPRF-203ENST00000372407 ABTB2Q8N961 1025 aa13.65□□□□□ -0.22
PTPRF-203ENST00000372407 WWC1Q8IX03 1113 aa13.65□□□□□ -0.22
PTPRF-203ENST00000372407 RUFY1Q96T51 708 aa13.65□□□□□ -0.22
PTPRF-203ENST00000372407 TBC1D2BQ9UPU7 963 aa13.65□□□□□ -0.22
PTPRF-203ENST00000372407 KDM5BQ9UGL1 1544 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-203ENST00000372407 WDR33Q9C0J8 1336 aaKnown RBP13.64□□□□□ -0.23
PTPRF-203ENST00000372407 CDR1P51861 262 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 CHD1LQ86WJ1 897 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 PDILTQ8N807 584 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 LRRCC1Q9C099 1032 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 CYP46A1Q9Y6A2 500 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 UHRF1BP1LA0JNW5 1464 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 MCM4P33991 863 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 FMNL2Q96PY5 1086 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 ITSN2Q9NZM3 1697 aa13.64□□□□□ -0.23
PTPRF-203ENST00000372407 OFD1O75665 1012 aa13.63□□□□□ -0.23
PTPRF-203ENST00000372407 NAP1L1P55209 391 aaKnown RBP13.63□□□□□ -0.23
PTPRF-203ENST00000372407 CABP1Q9NZU7 370 aa13.63□□□□□ -0.23
PTPRF-203ENST00000372407 MSH5O43196 834 aa13.63□□□□□ -0.23
PTPRF-203ENST00000372407 ZNF396Q96N95 335 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-203ENST00000372407 DNAJC2Q99543 621 aaKnown RBP13.63□□□□□ -0.23
PTPRF-203ENST00000372407 SRCIN1Q9C0H9 1055 aa13.63□□□□□ -0.23
PTPRF-203ENST00000372407 CTDP1Q9Y5B0 961 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-203ENST00000372407 ATP2B1P20020 1258 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 STK38Q15208 465 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 AK7Q96M32 723 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 CCDC192P0DO97 292 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 ANKRD1Q15327 319 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 AEBP1Q8IUX7 1158 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 IL27Q8NEV9 243 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 GRPEL1Q9HAV7 217 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 JMYQ8N9B5 988 aa13.62□□□□□ -0.23
PTPRF-203ENST00000372407 RBM33Q96EV2 1170 aaKnown RBP13.62□□□□□ -0.23
PTPRF-203ENST00000372407 KRT85P78386 507 aa13.61□□□□□ -0.23
PTPRF-203ENST00000372407 SLFN5Q08AF3 891 aa13.61□□□□□ -0.23
PTPRF-203ENST00000372407 RPAP2Q8IXW5 612 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-203ENST00000372407 CCDC43Q96MW1 224 aaKnown RBP13.61□□□□□ -0.23
PTPRF-203ENST00000372407 SMC2O95347 1197 aa13.61□□□□□ -0.23
PTPRF-203ENST00000372407 ANO8Q9HCE9 1232 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-203ENST00000372407 NEO1Q92859 1461 aa13.61□□□□□ -0.23
PTPRF-203ENST00000372407 CDK19Q9BWU1 502 aa13.6□□□□□ -0.23
PTPRF-203ENST00000372407 FILIP1LQ4L180 1135 aa13.6□□□□□ -0.23
PTPRF-203ENST00000372407 FCHSD2O94868 740 aa13.6□□□□□ -0.23
PTPRF-203ENST00000372407 CCP110O43303 1012 aa13.6□□□□□ -0.23
PTPRF-203ENST00000372407 DHX8Q14562 1220 aaKnown RBP13.59□□□□□ -0.23
PTPRF-203ENST00000372407 ERCC4Q92889 916 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-203ENST00000372407 FYB1O15117 783 aa13.59□□□□□ -0.23
PTPRF-203ENST00000372407 PHF23Q9BUL5 403 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-203ENST00000372407 SAMD9Q5K651 1589 aa13.59□□□□□ -0.23
PTPRF-203ENST00000372407 LARP1BQ659C4 914 aaKnown RBP13.59□□□□□ -0.23
PTPRF-203ENST00000372407 DUOX2Q9NRD8 1548 aa13.58□□□□□ -0.23
PTPRF-203ENST00000372407 ATP10AO60312 1499 aa13.58□□□□□ -0.24
PTPRF-203ENST00000372407 ESPNB1AK53 854 aa13.58□□□□□ -0.24
PTPRF-203ENST00000372407 HSPA2P54652 639 aa13.58□□□□□ -0.24
PTPRF-203ENST00000372407 CEBPZQ03701 1054 aaKnown RBP13.58□□□□□ -0.24
PTPRF-203ENST00000372407 BCL11BQ9C0K0 894 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-203ENST00000372407 PIP4K2AP48426 406 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-203ENST00000372407 CT47A1Q5JQC4 288 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-203ENST00000372407 CCDC158Q5M9N0 1113 aa13.57□□□□□ -0.24
PTPRF-203ENST00000372407 BLOC1S2Q6QNY1 142 aa13.57□□□□□ -0.24
PTPRF-203ENST00000372407 TNMDQ9H2S6 317 aa13.57□□□□□ -0.24
PTPRF-203ENST00000372407 FAM135AQ9P2D6 1515 aa13.57□□□□□ -0.24
PTPRF-203ENST00000372407 SPC24Q8NBT2 197 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms