RNA–Protein interactions for RNA: ENST00000371429.3

NDC1-201, Transcript of NDC1 transmembrane nucleoporin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDC1, Length 5,134 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-201ENST00000371429 PTPN23Q9H3S7 1636 aa17.76■□□□□ 0.43
NDC1-201ENST00000371429 XBP1P17861 261 aa17.76■□□□□ 0.43
NDC1-201ENST00000371429 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.76■□□□□ 0.439e-6■□□□□ 8.3
NDC1-201ENST00000371429 TMPOP42166 694 aaKnown RBP17.76■□□□□ 0.43
NDC1-201ENST00000371429 KRT28Q7Z3Y7 464 aa17.76■□□□□ 0.43
NDC1-201ENST00000371429 TPM1P09493 284 aa17.75■□□□□ 0.43
NDC1-201ENST00000371429 HOOK1Q9UJC3 728 aaKnown RBP17.75■□□□□ 0.43
NDC1-201ENST00000371429 PEG3Q9GZU2 1588 aa17.75■□□□□ 0.43
NDC1-201ENST00000371429 BRMS1Q9HCU9 246 aa17.75■□□□□ 0.43
NDC1-201ENST00000371429 AMOTQ4VCS5 1084 aa17.75■□□□□ 0.43
NDC1-201ENST00000371429 USHBP1Q8N6Y0 703 aa17.75■□□□□ 0.43
NDC1-201ENST00000371429 TNRQ92752 1358 aa17.75■□□□□ 0.43
NDC1-201ENST00000371429 LRPPRCP42704 1394 aaKnown RBP17.74■□□□□ 0.43
NDC1-201ENST00000371429 RRP12Q5JTH9 1297 aaKnown RBP17.74■□□□□ 0.43
NDC1-201ENST00000371429 CEP126Q9P2H0 1117 aa17.74■□□□□ 0.43
NDC1-201ENST00000371429 MCM10Q7L590 875 aa17.73■□□□□ 0.43
NDC1-201ENST00000371429 LRRCC1Q9C099 1032 aa17.73■□□□□ 0.43
NDC1-201ENST00000371429 MIS18AQ9NYP9 233 aa17.73■□□□□ 0.43
NDC1-201ENST00000371429 ASXL2Q76L83 1435 aa17.73■□□□□ 0.43
NDC1-201ENST00000371429 SRGAP3O43295 1099 aa17.73■□□□□ 0.43
NDC1-201ENST00000371429 ANKRD20A12PQ8NF67 263 aa17.73■□□□□ 0.43
NDC1-201ENST00000371429 PRM3Q9NNZ6 103 aa17.73■□□□□ 0.43
NDC1-201ENST00000371429 NOS1P29475 1434 aa17.73■□□□□ 0.43
NDC1-201ENST00000371429 CCAR1Q8IX12 1150 aaKnown RBP17.72■□□□□ 0.43
NDC1-201ENST00000371429 EMILIN1Q9Y6C2 1016 aa17.72■□□□□ 0.43
NDC1-201ENST00000371429 CHMP5Q9NZZ3 219 aa17.72■□□□□ 0.43
NDC1-201ENST00000371429 PDZRN3Q9UPQ7 1066 aa17.72■□□□□ 0.43
NDC1-201ENST00000371429 MPRIPQ6WCQ1 1025 aa17.72■□□□□ 0.43
NDC1-201ENST00000371429 THUMPD2Q9BTF0 503 aaKnown RBP17.72■□□□□ 0.43
NDC1-201ENST00000371429 EXOC5O00471 708 aa17.71■□□□□ 0.43
NDC1-201ENST00000371429 NUCB2P80303 420 aa17.71■□□□□ 0.43
NDC1-201ENST00000371429 PCMTD1Q96MG8 357 aaPredicted RBP17.71■□□□□ 0.43
NDC1-201ENST00000371429 NACAP1Q9BZK3 213 aa17.71■□□□□ 0.43
NDC1-201ENST00000371429 ZNF652Q9Y2D9 606 aa17.71■□□□□ 0.43
NDC1-201ENST00000371429 TEX14Q8IWB6 1497 aa17.71■□□□□ 0.43
NDC1-201ENST00000371429 CCDC85AQ96PX6 553 aaPredicted RBP17.71■□□□□ 0.43
NDC1-201ENST00000371429 C14orf93Q9H972 538 aaKnown RBP17.71■□□□□ 0.43
NDC1-201ENST00000371429 RBM5P52756 815 aaKnown RBP eCLIP17.71■□□□□ 0.42
NDC1-201ENST00000371429 ZPR1O75312 459 aa17.7■□□□□ 0.42
NDC1-201ENST00000371429 IGHMBP2P38935 993 aaKnown RBP17.7■□□□□ 0.42
NDC1-201ENST00000371429 DUSP27Q5VZP5 1158 aa17.7■□□□□ 0.42
NDC1-201ENST00000371429 CCDC73Q6ZRK6 1079 aa17.7■□□□□ 0.42
NDC1-201ENST00000371429 ATP2B2Q01814 1243 aa17.7■□□□□ 0.42
NDC1-201ENST00000371429 DCTN1Q14203 1278 aa17.69■□□□□ 0.42
NDC1-201ENST00000371429 TAF7Q15545 349 aaPredicted RBP17.69■□□□□ 0.42
NDC1-201ENST00000371429 FAM135AQ9P2D6 1515 aa17.69■□□□□ 0.42
NDC1-201ENST00000371429 KDM4AO75164 1064 aa17.69■□□□□ 0.42
NDC1-201ENST00000371429 FKBP4Q02790 459 aaKnown RBP eCLIP17.69■□□□□ 0.42
NDC1-201ENST00000371429 ANO8Q9HCE9 1232 aaPredicted RBP17.69■□□□□ 0.42
NDC1-201ENST00000371429 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.68■□□□□ 0.42
NDC1-201ENST00000371429 MAP3K1Q13233 1512 aa17.68■□□□□ 0.42
NDC1-201ENST00000371429 AACSQ86V21 672 aa17.68■□□□□ 0.42
NDC1-201ENST00000371429 MVPQ14764 893 aaKnown RBP17.67■□□□□ 0.42
NDC1-201ENST00000371429 NEK4P51957 841 aa17.67■□□□□ 0.42
NDC1-201ENST00000371429 ZSCAN25Q6NSZ9 544 aa17.67■□□□□ 0.42
NDC1-201ENST00000371429 PLCH2O75038 1416 aa17.67■□□□□ 0.42
NDC1-201ENST00000371429 IPO7O95373 1038 aaKnown RBP17.66■□□□□ 0.42
NDC1-201ENST00000371429 KDM5BQ9UGL1 1544 aa17.66■□□□□ 0.42
NDC1-201ENST00000371429 TOM1O60784 492 aa17.66■□□□□ 0.42
NDC1-201ENST00000371429 ATP2B1P20020 1258 aa17.66■□□□□ 0.42
NDC1-201ENST00000371429 MSH6P52701 1360 aa17.66■□□□□ 0.42
NDC1-201ENST00000371429 UBAP1LF5GYI3 381 aa17.66■□□□□ 0.42
NDC1-201ENST00000371429 LARP1Q6PKG0 1096 aaKnown RBP17.66■□□□□ 0.42
NDC1-201ENST00000371429 ATP10BO94823 1461 aa17.66■□□□□ 0.42
NDC1-201ENST00000371429 GPATCH8Q9UKJ3 1502 aaKnown RBP17.65■□□□□ 0.42
NDC1-201ENST00000371429 ACEP12821 1306 aa17.65■□□□□ 0.42
NDC1-201ENST00000371429 A0A0U1RQG5 324 aaPredicted RBP17.64■□□□□ 0.41
NDC1-201ENST00000371429 ZSCAN29Q8IWY8 852 aaPredicted RBP17.64■□□□□ 0.41
NDC1-201ENST00000371429 RAI14Q9P0K7 980 aa17.64■□□□□ 0.41
NDC1-201ENST00000371429 STK11IPQ8N1F8 1099 aa17.64■□□□□ 0.41
NDC1-201ENST00000371429 IL1RAPL2Q9NP60 686 aa17.64■□□□□ 0.41
NDC1-201ENST00000371429 RPAP2Q8IXW5 612 aaPredicted RBP17.63■□□□□ 0.41
NDC1-201ENST00000371429 WDR97A6NE52 1622 aa17.63■□□□□ 0.41
NDC1-201ENST00000371429 CHRNA2Q15822 529 aa17.63■□□□□ 0.41
NDC1-201ENST00000371429 CCDC184Q52MB2 194 aa17.63■□□□□ 0.41
NDC1-201ENST00000371429 R3HCC1Q9Y3T6 440 aaKnown RBP17.63■□□□□ 0.41
NDC1-201ENST00000371429 IFT57Q9NWB7 429 aa17.63■□□□□ 0.41
NDC1-201ENST00000371429 LRP2BPQ9P2M1 347 aa17.63■□□□□ 0.41
NDC1-201ENST00000371429 UHRF1BP1LA0JNW5 1464 aa17.63■□□□□ 0.41
NDC1-201ENST00000371429 SASS6Q6UVJ0 657 aa17.62■□□□□ 0.41
NDC1-201ENST00000371429 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
NDC1-201ENST00000371429 METTL24Q5JXM2 366 aa17.62■□□□□ 0.41
NDC1-201ENST00000371429 MAP4K4O95819 1239 aaPredicted RBP17.62■□□□□ 0.41
NDC1-201ENST00000371429 CNKSR2Q8WXI2 1034 aa17.62■□□□□ 0.41
NDC1-201ENST00000371429 SCAF11Q99590 1463 aaKnown RBP17.61■□□□□ 0.41
NDC1-201ENST00000371429 PDCP20941 246 aa17.61■□□□□ 0.41
NDC1-201ENST00000371429 IFNL2Q8IZJ0 200 aa17.61■□□□□ 0.41
NDC1-201ENST00000371429 FMNL2Q96PY5 1086 aa17.61■□□□□ 0.41
NDC1-201ENST00000371429 TTC21BQ7Z4L5 1316 aa17.61■□□□□ 0.41
NDC1-201ENST00000371429 MCM2P49736 904 aa17.61■□□□□ 0.41
NDC1-201ENST00000371429 SLFN5Q08AF3 891 aa17.61■□□□□ 0.41
NDC1-201ENST00000371429 SDF4Q9BRK5 362 aa17.61■□□□□ 0.41
NDC1-201ENST00000371429 MYD88Q99836 296 aa17.6■□□□□ 0.41
NDC1-201ENST00000371429 ABCF2Q9UG63 623 aa17.6■□□□□ 0.41
NDC1-201ENST00000371429 A2MP01023 1474 aa17.6■□□□□ 0.41
NDC1-201ENST00000371429 IDH1O75874 414 aaKnown RBP17.6■□□□□ 0.41
NDC1-201ENST00000371429 SPINK5Q9NQ38 1064 aaPredicted RBP17.6■□□□□ 0.41
NDC1-201ENST00000371429 HSP90AB3PQ58FF7 597 aa17.59■□□□□ 0.41
NDC1-201ENST00000371429 CYP46A1Q9Y6A2 500 aa17.59■□□□□ 0.41
NDC1-201ENST00000371429 TDO2P48775 406 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms