RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 PDZRN3Q9UPQ7 1066 aa5.35□□□□□ -1.55
MCF2-202ENST00000370573 ZNF644Q9H582 1327 aaPredicted RBP5.35□□□□□ -1.55
MCF2-202ENST00000370573 WDR7Q9Y4E6 1490 aa5.35□□□□□ -1.55
MCF2-202ENST00000370573 TNFRSF10AO00220 468 aa5.34□□□□□ -1.55
MCF2-202ENST00000370573 FAM50AQ14320 339 aaKnown RBP5.34□□□□□ -1.55
MCF2-202ENST00000370573 Q6ZNB5 142 aa5.34□□□□□ -1.55
MCF2-202ENST00000370573 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.34□□□□□ -1.55
MCF2-202ENST00000370573 ZNF697Q5TEC3 545 aa5.34□□□□□ -1.55
MCF2-202ENST00000370573 FAM117AQ9C073 453 aa5.34□□□□□ -1.55
MCF2-202ENST00000370573 TTC37Q6PGP7 1564 aa5.34□□□□□ -1.56
MCF2-202ENST00000370573 FOXC1Q12948 553 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 RSBN1LQ6PCB5 846 aaPredicted RBP5.33□□□□□ -1.56
MCF2-202ENST00000370573 TRIM67Q6ZTA4 783 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 POLR3EQ9NVU0 708 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 CFDP1Q9UEE9 299 aaPredicted RBP5.33□□□□□ -1.56
MCF2-202ENST00000370573 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.33□□□□□ -1.56
MCF2-202ENST00000370573 MIA2Q96PC5 1412 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 CDC42BPAQ5VT25 1732 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 APBB1O00213 710 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 MMP16P51512 607 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 RIC3Q7Z5B4 369 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 ZNF598Q86UK7 904 aaKnown RBP5.33□□□□□ -1.56
MCF2-202ENST00000370573 RETREG3Q86VR2 466 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 CABLES1Q8TDN4 633 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 PTPN23Q9H3S7 1636 aa5.33□□□□□ -1.56
MCF2-202ENST00000370573 TCOF1Q13428 1488 aaKnown RBP5.32□□□□□ -1.56
MCF2-202ENST00000370573 ZBTB24O43167 697 aaPredicted RBP5.32□□□□□ -1.56
MCF2-202ENST00000370573 DXOO77932 396 aaKnown RBP5.32□□□□□ -1.56
MCF2-202ENST00000370573 ITGAEP38570 1179 aa5.32□□□□□ -1.56
MCF2-202ENST00000370573 MTMR2Q13614 643 aa5.32□□□□□ -1.56
MCF2-202ENST00000370573 MYSM1Q5VVJ2 828 aa5.32□□□□□ -1.56
MCF2-202ENST00000370573 LIMD1Q9UGP4 676 aa5.32□□□□□ -1.56
MCF2-202ENST00000370573 MAPKBP1O60336 1514 aa5.32□□□□□ -1.56
MCF2-202ENST00000370573 PRR7Q8TB68 274 aa5.32□□□□□ -1.56
MCF2-202ENST00000370573 ZNF777Q9ULD5 760 aaPredicted RBP5.32□□□□□ -1.56
MCF2-202ENST00000370573 PLCH2O75038 1416 aa5.32□□□□□ -1.56
MCF2-202ENST00000370573 PTPRKQ15262 1439 aa5.32□□□□□ -1.56
MCF2-202ENST00000370573 CDC42BPBQ9Y5S2 1711 aa5.31□□□□□ -1.56
MCF2-202ENST00000370573 PLEKHG3A1L390 1219 aa5.31□□□□□ -1.56
MCF2-202ENST00000370573 QPCTQ16769 361 aa5.31□□□□□ -1.56
MCF2-202ENST00000370573 TSC1Q92574 1164 aa5.31□□□□□ -1.56
MCF2-202ENST00000370573 CD2BP2O95400 341 aaKnown RBP5.31□□□□□ -1.56
MCF2-202ENST00000370573 JUNDP17535 347 aa5.31□□□□□ -1.56
MCF2-202ENST00000370573 DIXDC1Q155Q3 683 aa5.31□□□□□ -1.56
MCF2-202ENST00000370573 ABCA9Q8IUA7 1624 aa5.31□□□□□ -1.56
MCF2-202ENST00000370573 SPTLC1O15269 473 aa5.3□□□□□ -1.56
MCF2-202ENST00000370573 PREX2Q70Z35 1606 aa5.3□□□□□ -1.56
MCF2-202ENST00000370573 NUDT12Q9BQG2 462 aa5.3□□□□□ -1.56
MCF2-202ENST00000370573 ITSN2Q9NZM3 1697 aa5.3□□□□□ -1.56
MCF2-202ENST00000370573 CAMSAP2Q08AD1 1489 aa5.3□□□□□ -1.56
MCF2-202ENST00000370573 NUTM2BA6NNL0 878 aaPredicted RBP5.3□□□□□ -1.56
MCF2-202ENST00000370573 NUTM2EB1AL46 878 aaPredicted RBP5.3□□□□□ -1.56
MCF2-202ENST00000370573 CFAP99D6REC4 459 aa5.3□□□□□ -1.56
MCF2-202ENST00000370573 HNRNPMP52272 730 aaKnown RBP eCLIP5.3□□□□□ -1.56
MCF2-202ENST00000370573 NUTM2DQ5VT03 806 aaPredicted RBP5.3□□□□□ -1.56
MCF2-202ENST00000370573 EFCAB2Q5VUJ9 269 aa5.3□□□□□ -1.56
MCF2-202ENST00000370573 PTCRAQ6ISU1 281 aaPredicted RBP5.3□□□□□ -1.56
MCF2-202ENST00000370573 NUTM2AQ8IVF1 878 aaPredicted RBP5.3□□□□□ -1.56
MCF2-202ENST00000370573 ABCC5O15440 1437 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 TRIM32Q13049 653 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 MYO5CQ9NQX4 1742 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 SAMD9LQ8IVG5 1584 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 ARHGAP5Q13017 1502 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 CD109Q6YHK3 1445 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 NRG2O14511 850 aaPredicted RBP5.29□□□□□ -1.56
MCF2-202ENST00000370573 GDF9O60383 454 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 RPIAP49247 311 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 FAM69CQ0P6D2 419 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 ZBTB3Q9H5J0 574 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 CHIC2Q9UKJ5 165 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 ARHGEF12Q9NZN5 1544 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 MBD5Q9P267 1494 aa5.29□□□□□ -1.56
MCF2-202ENST00000370573 PKD2L1Q9P0L9 805 aa5.28□□□□□ -1.56
MCF2-202ENST00000370573 GLI2P10070 1586 aa5.28□□□□□ -1.56
MCF2-202ENST00000370573 ARAP3Q8WWN8 1544 aa5.28□□□□□ -1.56
MCF2-202ENST00000370573 DAPK1P53355 1430 aa5.28□□□□□ -1.56
MCF2-202ENST00000370573 DIP2BQ9P265 1576 aa5.28□□□□□ -1.56
MCF2-202ENST00000370573 LCE2BO14633 110 aa5.28□□□□□ -1.56
MCF2-202ENST00000370573 DNMT1P26358 1616 aaKnown RBP5.28□□□□□ -1.56
MCF2-202ENST00000370573 CLK2P49760 499 aaKnown RBP5.27□□□□□ -1.57
MCF2-202ENST00000370573 LAPTM4AQ15012 233 aa5.27□□□□□ -1.57
MCF2-202ENST00000370573 RTL5Q5HYW3 569 aaPredicted RBP5.27□□□□□ -1.57
MCF2-202ENST00000370573 PROCA1Q8NCQ7 364 aaPredicted RBP5.27□□□□□ -1.57
MCF2-202ENST00000370573 KIAA1107Q9UPP5 1409 aa5.27□□□□□ -1.57
MCF2-202ENST00000370573 FANCAO15360 1455 aa5.27□□□□□ -1.57
MCF2-202ENST00000370573 SPDYE5A6NIY4 337 aa5.27□□□□□ -1.57
MCF2-202ENST00000370573 PER1O15534 1290 aaPredicted RBP5.27□□□□□ -1.57
MCF2-202ENST00000370573 RRP7BPQ9NSQ0 103 aa5.27□□□□□ -1.57
MCF2-202ENST00000370573 MAP3K4Q9Y6R4 1608 aa5.27□□□□□ -1.57
MCF2-202ENST00000370573 SYCP2Q9BX26 1530 aa5.27□□□□□ -1.57
MCF2-202ENST00000370573 FAM187AA6NFU0 413 aa5.26□□□□□ -1.57
MCF2-202ENST00000370573 CCNYL3P0C7X3 344 aa5.26□□□□□ -1.57
MCF2-202ENST00000370573 CTHP32929 405 aa5.26□□□□□ -1.57
MCF2-202ENST00000370573 GJA5P36382 358 aa5.26□□□□□ -1.57
MCF2-202ENST00000370573 FBXO31Q5XUX0 539 aaPredicted RBP5.26□□□□□ -1.57
MCF2-202ENST00000370573 TRAF7Q6Q0C0 670 aa5.26□□□□□ -1.57
MCF2-202ENST00000370573 CLUAP1Q96AJ1 413 aa5.26□□□□□ -1.57
MCF2-202ENST00000370573 AKNAQ7Z591 1439 aa5.26□□□□□ -1.57
MCF2-202ENST00000370573 TRAPPC8Q9Y2L5 1435 aa5.26□□□□□ -1.57
MCF2-202ENST00000370573 ARHGEF5Q12774 1597 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms