RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 E9PCH4 1651 aa6.82□□□□□ -1.32
UBE3D-202ENST00000369746 KCNQ2O43526 872 aa6.82□□□□□ -1.32
UBE3D-202ENST00000369746 IFNLR1Q8IU57 520 aaPredicted RBP6.82□□□□□ -1.32
UBE3D-202ENST00000369746 CCDC82Q8N4S0 544 aa6.82□□□□□ -1.32
UBE3D-202ENST00000369746 ALS2Q96Q42 1657 aa6.82□□□□□ -1.32
UBE3D-202ENST00000369746 TNS3Q68CZ2 1445 aa6.82□□□□□ -1.32
UBE3D-202ENST00000369746 FAM50AQ14320 339 aaKnown RBP6.82□□□□□ -1.32
UBE3D-202ENST00000369746 IPO4Q8TEX9 1081 aaKnown RBP6.82□□□□□ -1.32
UBE3D-202ENST00000369746 SHANK3Q9BYB0 1731 aa6.82□□□□□ -1.32
UBE3D-202ENST00000369746 DAPK1P53355 1430 aa6.82□□□□□ -1.32
UBE3D-202ENST00000369746 TRPM3Q9HCF6 1732 aaPredicted RBP6.81□□□□□ -1.32
UBE3D-202ENST00000369746 OS9Q13438 667 aaPredicted RBP6.81□□□□□ -1.32
UBE3D-202ENST00000369746 C8orf37Q96NL8 207 aa6.81□□□□□ -1.32
UBE3D-202ENST00000369746 CAMKK2Q96RR4 588 aa6.81□□□□□ -1.32
UBE3D-202ENST00000369746 GZF1Q9H116 711 aaPredicted RBP6.81□□□□□ -1.32
UBE3D-202ENST00000369746 STAG3Q9UJ98 1225 aa6.81□□□□□ -1.32
UBE3D-202ENST00000369746 ATP7BP35670 1465 aa6.81□□□□□ -1.32
UBE3D-202ENST00000369746 FAM196AQ6ZSG2 479 aa6.8□□□□□ -1.32
UBE3D-202ENST00000369746 E9PSI1 815 aa6.8□□□□□ -1.32
UBE3D-202ENST00000369746 PTMSP20962 102 aa6.8□□□□□ -1.32
UBE3D-202ENST00000369746 FAM9BQ8IZU0 186 aa6.8□□□□□ -1.32
UBE3D-202ENST00000369746 THRAP3Q9Y2W1 955 aaKnown RBP6.8□□□□□ -1.32
UBE3D-202ENST00000369746 CLTCL1P53675 1640 aa6.8□□□□□ -1.32
UBE3D-202ENST00000369746 SPATA31A3Q5VYP0 1347 aa6.79□□□□□ -1.32
UBE3D-202ENST00000369746 PRELPP51888 382 aa6.79□□□□□ -1.32
UBE3D-202ENST00000369746 BARGINQ6ZT62 677 aa6.79□□□□□ -1.32
UBE3D-202ENST00000369746 YTHDC1Q96MU7 727 aaKnown RBP6.79□□□□□ -1.32
UBE3D-202ENST00000369746 WNK3Q9BYP7 1800 aa6.79□□□□□ -1.32
UBE3D-202ENST00000369746 NRKQ7Z2Y5 1582 aa6.79□□□□□ -1.32
UBE3D-202ENST00000369746 GRIPAP1Q4V328 841 aa6.79□□□□□ -1.32
UBE3D-202ENST00000369746 ZNF784Q8NCA9 323 aaPredicted RBP6.79□□□□□ -1.32
UBE3D-202ENST00000369746 AMOTL2Q9Y2J4 779 aa6.79□□□□□ -1.32
UBE3D-202ENST00000369746 KIF1BO60333 1816 aa6.79□□□□□ -1.32
UBE3D-202ENST00000369746 PLSCR1O15162 318 aa6.78□□□□□ -1.32
UBE3D-202ENST00000369746 PAPPAQ13219 1627 aa6.78□□□□□ -1.32
UBE3D-202ENST00000369746 IFT172Q9UG01 1749 aa6.78□□□□□ -1.32
UBE3D-202ENST00000369746 ANKRD30BQ9BXX2 1392 aa6.78□□□□□ -1.32
UBE3D-202ENST00000369746 PSME1Q06323 249 aa6.78□□□□□ -1.32
UBE3D-202ENST00000369746 ZNF777Q9ULD5 760 aaPredicted RBP6.78□□□□□ -1.32
UBE3D-202ENST00000369746 SENP3-EIF4A1A0A087X0R7 540 aa6.77□□□□□ -1.33
UBE3D-202ENST00000369746 GPATCH11Q8N954 259 aa6.77□□□□□ -1.33
UBE3D-202ENST00000369746 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.77□□□□□ -1.33
UBE3D-202ENST00000369746 TULP4Q9NRJ4 1543 aa6.77□□□□□ -1.33
UBE3D-202ENST00000369746 FTSJ3Q8IY81 847 aaKnown RBP6.77□□□□□ -1.33
UBE3D-202ENST00000369746 SEPT12Q8IYM1 358 aa6.77□□□□□ -1.33
UBE3D-202ENST00000369746 ADCY9O60503 1353 aa6.76□□□□□ -1.33
UBE3D-202ENST00000369746 MYOM1P52179 1685 aa6.76□□□□□ -1.33
UBE3D-202ENST00000369746 PPLO60437 1756 aa6.76□□□□□ -1.33
UBE3D-202ENST00000369746 FAM83GA6ND36 823 aa6.76□□□□□ -1.33
UBE3D-202ENST00000369746 ARHGEF28Q8N1W1 1705 aaKnown RBP6.76□□□□□ -1.33
UBE3D-202ENST00000369746 BRD1O95696 1058 aa6.76□□□□□ -1.33
UBE3D-202ENST00000369746 SLC16A10Q8TF71 515 aa6.76□□□□□ -1.33
UBE3D-202ENST00000369746 ABCC11Q96J66 1382 aa6.76□□□□□ -1.33
UBE3D-202ENST00000369746 ITSN1Q15811 1721 aa6.75□□□□□ -1.33
UBE3D-202ENST00000369746 GIGYF1O75420 1035 aaPredicted RBP6.75□□□□□ -1.33
UBE3D-202ENST00000369746 FOXD4L6Q3SYB3 417 aaPredicted RBP6.75□□□□□ -1.33
UBE3D-202ENST00000369746 FOXD4L3Q6VB84 417 aaPredicted RBP6.75□□□□□ -1.33
UBE3D-202ENST00000369746 SPATA31A5Q5VU36 1347 aa6.75□□□□□ -1.33
UBE3D-202ENST00000369746 SPATA31A7Q8IWB4 1347 aa6.75□□□□□ -1.33
UBE3D-202ENST00000369746 SMARCA5O60264 1052 aaPredicted RBP6.75□□□□□ -1.33
UBE3D-202ENST00000369746 LMOD2Q6P5Q4 547 aa6.75□□□□□ -1.33
UBE3D-202ENST00000369746 JMYQ8N9B5 988 aa6.75□□□□□ -1.33
UBE3D-202ENST00000369746 SLC24A3Q9HC58 644 aa6.75□□□□□ -1.33
UBE3D-202ENST00000369746 APLP1P51693 650 aa6.74□□□□□ -1.33
UBE3D-202ENST00000369746 SGSM3Q96HU1 749 aa6.74□□□□□ -1.33
UBE3D-202ENST00000369746 SLC26A8Q96RN1 970 aa6.74□□□□□ -1.33
UBE3D-202ENST00000369746 LMO7Q8WWI1 1683 aa6.74□□□□□ -1.33
UBE3D-202ENST00000369746 PATL2C9JE40 543 aaKnown RBP6.74□□□□□ -1.33
UBE3D-202ENST00000369746 SETQ01105 290 aaPredicted RBP6.74□□□□□ -1.33
UBE3D-202ENST00000369746 DNAJC2Q99543 621 aaKnown RBP6.74□□□□□ -1.33
UBE3D-202ENST00000369746 CDCA7Q9BWT1 371 aaPredicted RBP6.74□□□□□ -1.33
UBE3D-202ENST00000369746 LOC102724159A0A0B4J2E5 919 aa6.73□□□□□ -1.33
UBE3D-202ENST00000369746 GRIN3BO60391 1043 aa6.73□□□□□ -1.33
UBE3D-202ENST00000369746 HSPA6P17066 643 aa6.73□□□□□ -1.33
UBE3D-202ENST00000369746 PWP2Q15269 919 aaKnown RBP6.73□□□□□ -1.33
UBE3D-202ENST00000369746 SBF2Q86WG5 1849 aa6.73□□□□□ -1.33
UBE3D-202ENST00000369746 MAFGO15525 162 aa6.73□□□□□ -1.33
UBE3D-202ENST00000369746 PHRF1Q9P1Y6 1649 aaKnown RBP6.73□□□□□ -1.33
UBE3D-202ENST00000369746 CPDO75976 1380 aa6.72□□□□□ -1.33
UBE3D-202ENST00000369746 MCCP23508 829 aa6.72□□□□□ -1.33
UBE3D-202ENST00000369746 LAS1LQ9Y4W2 734 aaKnown RBP6.72□□□□□ -1.33
UBE3D-202ENST00000369746 ANKRD50Q9ULJ7 1429 aa6.72□□□□□ -1.33
UBE3D-202ENST00000369746 MKRN3Q13064 507 aaKnown RBP6.72□□□□□ -1.33
UBE3D-202ENST00000369746 ZNF644Q9H582 1327 aaPredicted RBP6.72□□□□□ -1.33
UBE3D-202ENST00000369746 NHSQ6T4R5 1651 aa6.72□□□□□ -1.33
UBE3D-202ENST00000369746 RGL2O15211 777 aa6.71□□□□□ -1.33
UBE3D-202ENST00000369746 FAM193AP78312 1265 aa6.71□□□□□ -1.33
UBE3D-202ENST00000369746 TMTC2Q8N394 836 aa6.71□□□□□ -1.33
UBE3D-202ENST00000369746 WDR90Q96KV7 1748 aa6.71□□□□□ -1.34
UBE3D-202ENST00000369746 NAIPQ13075 1403 aa6.71□□□□□ -1.34
UBE3D-202ENST00000369746 PXDNLA1KZ92 1463 aa6.7□□□□□ -1.34
UBE3D-202ENST00000369746 VPS8Q8N3P4 1428 aa6.7□□□□□ -1.34
UBE3D-202ENST00000369746 USP54Q70EL1 1684 aa6.7□□□□□ -1.34
UBE3D-202ENST00000369746 VGFO15240 615 aaPredicted RBP6.7□□□□□ -1.34
UBE3D-202ENST00000369746 SGIP1Q9BQI5 828 aa6.7□□□□□ -1.34
UBE3D-202ENST00000369746 MTFR1LQ9H019 292 aa6.7□□□□□ -1.34
UBE3D-202ENST00000369746 OVOS2A0A0G2JMS6 1433 aa6.69□□□□□ -1.34
UBE3D-202ENST00000369746 OVOS2A0A0J9YW53 1432 aa6.69□□□□□ -1.34
UBE3D-202ENST00000369746 OVOS2Q6IE36 1432 aa6.69□□□□□ -1.34
UBE3D-202ENST00000369746 GTF2E1P29083 439 aaPredicted RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms