RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 COL3A1P02461 1466 aaPredicted RBP15.09■□□□□ 0.01
CLIP3-201ENST00000360535 SSFA2P28290 1259 aa15.09■□□□□ 0.01
CLIP3-201ENST00000360535 RBM25P49756 843 aaKnown RBP15.09■□□□□ 0.01
CLIP3-201ENST00000360535 AEBP1Q8IUX7 1158 aa15.09■□□□□ 0.01
CLIP3-201ENST00000360535 GCC1Q96CN9 775 aa15.09■□□□□ 0.01
CLIP3-201ENST00000360535 GRPEL1Q9HAV7 217 aa15.09■□□□□ 0.01
CLIP3-201ENST00000360535 OTUD7AQ8TE49 926 aaPredicted RBP15.09■□□□□ 0.01
CLIP3-201ENST00000360535 COG3Q96JB2 828 aa15.09■□□□□ 0.01
CLIP3-201ENST00000360535 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
CLIP3-201ENST00000360535 MCM10Q7L590 875 aa15.08■□□□□ 0.01
CLIP3-201ENST00000360535 GBP4Q96PP9 640 aa15.08■□□□□ 0.01
CLIP3-201ENST00000360535 CD163L1Q9NR16 1453 aa15.08■□□□□ 0.01
CLIP3-201ENST00000360535 USP32Q8NFA0 1604 aa15.08■□□□□ 0
CLIP3-201ENST00000360535 NCBP3Q53F19 620 aaKnown RBP15.08■□□□□ 0
CLIP3-201ENST00000360535 GAS2L2Q8NHY3 880 aa15.08■□□□□ 0
CLIP3-201ENST00000360535 ZMYM3Q14202 1370 aa15.08■□□□□ 0
CLIP3-201ENST00000360535 FOXD4L5Q5VV16 416 aaPredicted RBP15.08■□□□□ 0
CLIP3-201ENST00000360535 SLC4A10Q6U841 1118 aa15.08■□□□□ 0
CLIP3-201ENST00000360535 FOXD4L4Q8WXT5 416 aaPredicted RBP15.08■□□□□ 0
CLIP3-201ENST00000360535 PTPRMP28827 1452 aa15.07■□□□□ 0
CLIP3-201ENST00000360535 CALD1Q05682 793 aaKnown RBP15.07■□□□□ 0
CLIP3-201ENST00000360535 LRRC7Q96NW7 1537 aa15.07■□□□□ 0
CLIP3-201ENST00000360535 SULT6B1Q6IMI4 303 aa15.07■□□□□ 0
CLIP3-201ENST00000360535 KIF2CQ99661 725 aa15.07■□□□□ 0
CLIP3-201ENST00000360535 PIK3C2BO00750 1634 aa15.07■□□□□ 0
CLIP3-201ENST00000360535 FSD2A1L4K1 749 aa15.07■□□□□ 0
CLIP3-201ENST00000360535 K7ELQ4 463 aaPredicted RBP15.07■□□□□ 0
CLIP3-201ENST00000360535 GAS2L3Q86XJ1 694 aa15.07■□□□□ 0
CLIP3-201ENST00000360535 UBE2Q2Q8WVN8 375 aa15.07■□□□□ 0
CLIP3-201ENST00000360535 IL13P35225 146 aa15.06■□□□□ 0
CLIP3-201ENST00000360535 MRE11P49959 708 aa15.06■□□□□ 0
CLIP3-201ENST00000360535 TRIM44Q96DX7 344 aaPredicted RBP15.06■□□□□ 0
CLIP3-201ENST00000360535 IFT57Q9NWB7 429 aa15.06■□□□□ 0
CLIP3-201ENST00000360535 AK9Q5TCS8 1911 aa15.06■□□□□ 0
CLIP3-201ENST00000360535 CDC45O75419 566 aa15.05■□□□□ -0
CLIP3-201ENST00000360535 GSPT1P15170 499 aaKnown RBP15.05■□□□□ -0
CLIP3-201ENST00000360535 NUDT16Q96DE0 195 aaKnown RBP15.05■□□□□ -0
CLIP3-201ENST00000360535 API5Q9BZZ5 524 aaKnown RBP15.05■□□□□ -0
CLIP3-201ENST00000360535 CHMP4BQ9H444 224 aaKnown RBP15.05■□□□□ -0
CLIP3-201ENST00000360535 NECTIN2Q92692 538 aa15.04■□□□□ -0
CLIP3-201ENST00000360535 SNX21Q969T3 373 aa15.04■□□□□ -0
CLIP3-201ENST00000360535 CFAP44Q96MT7 982 aa15.04■□□□□ -0
CLIP3-201ENST00000360535 DDX49Q9Y6V7 483 aaKnown RBP15.04■□□□□ -0
CLIP3-201ENST00000360535 PNPLA6Q8IY17 1366 aa15.04■□□□□ -0
CLIP3-201ENST00000360535 NOL8Q76FK4 1167 aaKnown RBP15.03■□□□□ -0
CLIP3-201ENST00000360535 PLEKHM2Q8IWE5 1019 aa15.03■□□□□ -0
CLIP3-201ENST00000360535 FAM135BQ49AJ0 1406 aa15.03■□□□□ -0
CLIP3-201ENST00000360535 MAP2P11137 1827 aaKnown RBP15.03■□□□□ -0
CLIP3-201ENST00000360535 WASLO00401 505 aaPredicted RBP15.03■□□□□ -0
CLIP3-201ENST00000360535 TPRNQ4KMQ1 711 aa15.03■□□□□ -0
CLIP3-201ENST00000360535 MCTP1Q6DN14 999 aa15.03■□□□□ -0
CLIP3-201ENST00000360535 RAB3GAP1Q15042 981 aa15.02■□□□□ -0
CLIP3-201ENST00000360535 TSHZ3Q63HK5 1081 aa15.02■□□□□ -0
CLIP3-201ENST00000360535 GOLGA6L22H0YM25 854 aa15.02□□□□□ -0.01
CLIP3-201ENST00000360535 FAM69CQ0P6D2 419 aa15.02□□□□□ -0.01
CLIP3-201ENST00000360535 CHAMP1Q96JM3 812 aa15.02□□□□□ -0.01
CLIP3-201ENST00000360535 F6X3S4 739 aa15.01□□□□□ -0.01
CLIP3-201ENST00000360535 ZNF428Q96B54 188 aa15.01□□□□□ -0.01
CLIP3-201ENST00000360535 ESF1Q9H501 851 aaKnown RBP15.01□□□□□ -0.01
CLIP3-201ENST00000360535 LMOD3Q0VAK6 560 aa15.01□□□□□ -0.01
CLIP3-201ENST00000360535 ARHGAP45Q92619 1136 aa15.01□□□□□ -0.01
CLIP3-201ENST00000360535 MEIS3Q99687 375 aa15.01□□□□□ -0.01
CLIP3-201ENST00000360535 ABCC4O15439 1325 aa15.01□□□□□ -0.01
CLIP3-201ENST00000360535 PKP1Q13835 747 aa15□□□□□ -0.01
CLIP3-201ENST00000360535 ZFYVE9O95405 1425 aa15□□□□□ -0.01
CLIP3-201ENST00000360535 SLC4A2P04920 1241 aa15□□□□□ -0.01
CLIP3-201ENST00000360535 DIP2CQ9Y2E4 1556 aa15□□□□□ -0.01
CLIP3-201ENST00000360535 FOXD4L6Q3SYB3 417 aaPredicted RBP14.99□□□□□ -0.01
CLIP3-201ENST00000360535 FOXD4L3Q6VB84 417 aaPredicted RBP14.99□□□□□ -0.01
CLIP3-201ENST00000360535 ZNF853P0CG23 659 aa14.99□□□□□ -0.01
CLIP3-201ENST00000360535 HSP90AB2PQ58FF8 381 aa14.99□□□□□ -0.01
CLIP3-201ENST00000360535 ALKQ9UM73 1620 aa14.99□□□□□ -0.01
CLIP3-201ENST00000360535 FOXO3O43524 673 aa14.99□□□□□ -0.01
CLIP3-201ENST00000360535 DDIT3P35638 169 aa14.99□□□□□ -0.01
CLIP3-201ENST00000360535 CCDC61Q9Y6R9 512 aa14.99□□□□□ -0.01
CLIP3-201ENST00000360535 ARHGEF40Q8TER5 1519 aa14.98□□□□□ -0.01
CLIP3-201ENST00000360535 TTC22Q5TAA0 569 aa14.98□□□□□ -0.01
CLIP3-201ENST00000360535 PLEKHG5O94827 1062 aa14.98□□□□□ -0.01
CLIP3-201ENST00000360535 SDSP20132 328 aa14.98□□□□□ -0.01
CLIP3-201ENST00000360535 CIZ1Q9ULV3 898 aaPredicted RBP14.98□□□□□ -0.01
CLIP3-201ENST00000360535 EIF4A2Q14240 407 aaKnown RBP14.98□□□□□ -0.01
CLIP3-201ENST00000360535 CAVIN1Q6NZI2 390 aaKnown RBP14.98□□□□□ -0.01
CLIP3-201ENST00000360535 DCTPP1Q9H773 170 aa14.98□□□□□ -0.01
CLIP3-201ENST00000360535 ESPNB1AK53 854 aa14.97□□□□□ -0.01
CLIP3-201ENST00000360535 BAG4O95429 457 aaKnown RBP14.97□□□□□ -0.01
CLIP3-201ENST00000360535 ZGPATQ8N5A5 531 aaKnown RBP14.97□□□□□ -0.01
CLIP3-201ENST00000360535 ERBB4Q15303 1308 aa14.97□□□□□ -0.01
CLIP3-201ENST00000360535 RIMS2Q9UQ26 1411 aa14.97□□□□□ -0.01
CLIP3-201ENST00000360535 EXOC6BQ9Y2D4 811 aa14.96□□□□□ -0.01
CLIP3-201ENST00000360535 CFAP74Q9C0B2 1584 aa14.96□□□□□ -0.01
CLIP3-201ENST00000360535 BRPF1P55201 1214 aaPredicted RBP14.96□□□□□ -0.01
CLIP3-201ENST00000360535 G2E3Q7L622 706 aa14.96□□□□□ -0.01
CLIP3-201ENST00000360535 INTS3Q68E01 1043 aaKnown RBP14.96□□□□□ -0.02
CLIP3-201ENST00000360535 CASC1Q6TDU7 716 aa14.96□□□□□ -0.02
CLIP3-201ENST00000360535 METP08581 1390 aa14.95□□□□□ -0.02
CLIP3-201ENST00000360535 ARHGAP31Q2M1Z3 1444 aa14.95□□□□□ -0.02
CLIP3-201ENST00000360535 SKOR2Q2VWA4 1001 aaPredicted RBP14.95□□□□□ -0.02
CLIP3-201ENST00000360535 CEP85Q6P2H3 762 aa14.95□□□□□ -0.02
CLIP3-201ENST00000360535 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.95□□□□□ -0.02
CLIP3-201ENST00000360535 TMEM131LA2VDJ0 1609 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms