RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TTC21BQ7Z4L5 1316 aa26.53■■□□□ 1.84
CCDC88B-203ENST00000359902 PLEKHG3A1L390 1219 aa26.53■■□□□ 1.84
CCDC88B-203ENST00000359902 USP19O94966 1318 aa26.52■■□□□ 1.84
CCDC88B-203ENST00000359902 ACEP12821 1306 aa26.52■■□□□ 1.84
CCDC88B-203ENST00000359902 SLC4A3P48751 1232 aa26.52■■□□□ 1.84
CCDC88B-203ENST00000359902 BRPF1P55201 1214 aaPredicted RBP26.52■■□□□ 1.84
CCDC88B-203ENST00000359902 SLC26A8Q96RN1 970 aa26.52■■□□□ 1.84
CCDC88B-203ENST00000359902 PTPRUQ92729 1446 aa26.52■■□□□ 1.84
CCDC88B-203ENST00000359902 HDAC1Q13547 482 aaPredicted RBP26.51■■□□□ 1.84
CCDC88B-203ENST00000359902 RTL5Q5HYW3 569 aaPredicted RBP26.51■■□□□ 1.84
CCDC88B-203ENST00000359902 IFT57Q9NWB7 429 aa26.51■■□□□ 1.84
CCDC88B-203ENST00000359902 SEC24BO95487 1268 aa26.51■■□□□ 1.83
CCDC88B-203ENST00000359902 ZNF853P0CG23 659 aa26.51■■□□□ 1.83
CCDC88B-203ENST00000359902 GNAI1P63096 354 aa26.5■■□□□ 1.83
CCDC88B-203ENST00000359902 EID1Q9Y6B2 187 aa26.5■■□□□ 1.83
CCDC88B-203ENST00000359902 VAMP4O75379 141 aa26.5■■□□□ 1.83
CCDC88B-203ENST00000359902 TOPAZ1Q8N9V7 1692 aa26.49■■□□□ 1.83
CCDC88B-203ENST00000359902 ZBTB40Q9NUA8 1239 aa26.49■■□□□ 1.83
CCDC88B-203ENST00000359902 NUTM2FA1L443 756 aa26.49■■□□□ 1.83
CCDC88B-203ENST00000359902 DEKP35659 375 aaKnown RBP26.49■■□□□ 1.83
CCDC88B-203ENST00000359902 DAXXQ9UER7 740 aaPredicted RBP26.48■■□□□ 1.83
CCDC88B-203ENST00000359902 NRKQ7Z2Y5 1582 aa26.48■■□□□ 1.83
CCDC88B-203ENST00000359902 MBIPQ9NS73 344 aa26.47■■□□□ 1.83
CCDC88B-203ENST00000359902 LMOD3Q0VAK6 560 aa26.47■■□□□ 1.83
CCDC88B-203ENST00000359902 TSPYL6Q8N831 410 aa26.47■■□□□ 1.83
CCDC88B-203ENST00000359902 USP6P35125 1406 aa26.46■■□□□ 1.83
CCDC88B-203ENST00000359902 OVOS2A0A0J9YW53 1432 aa26.45■■□□□ 1.83
CCDC88B-203ENST00000359902 OVOS2Q6IE36 1432 aa26.45■■□□□ 1.83
CCDC88B-203ENST00000359902 SLIT1O75093 1534 aa26.45■■□□□ 1.82
CCDC88B-203ENST00000359902 DLG5Q8TDM6 1919 aa26.45■■□□□ 1.82
CCDC88B-203ENST00000359902 AMOTL2Q9Y2J4 779 aa26.45■■□□□ 1.82
CCDC88B-203ENST00000359902 ARHGAP23Q9P227 1491 aa26.45■■□□□ 1.82
CCDC88B-203ENST00000359902 EIF4A2Q14240 407 aaKnown RBP26.44■■□□□ 1.82
CCDC88B-203ENST00000359902 MRPL50Q8N5N7 158 aaKnown RBP26.44■■□□□ 1.82
CCDC88B-203ENST00000359902 CFAP44Q96MT7 982 aa26.44■■□□□ 1.82
CCDC88B-203ENST00000359902 TBX22Q9Y458 520 aa26.44■■□□□ 1.82
CCDC88B-203ENST00000359902 USP35Q9P2H5 1018 aa26.43■■□□□ 1.82
CCDC88B-203ENST00000359902 FAM83GA6ND36 823 aa26.42■■□□□ 1.82
CCDC88B-203ENST00000359902 SMC5Q8IY18 1101 aa26.42■■□□□ 1.82
CCDC88B-203ENST00000359902 ARHGAP45Q92619 1136 aa26.42■■□□□ 1.82
CCDC88B-203ENST00000359902 AEBP1Q8IUX7 1158 aa26.4■■□□□ 1.82
CCDC88B-203ENST00000359902 SSH2Q76I76 1423 aa26.4■■□□□ 1.82
CCDC88B-203ENST00000359902 ELL2O00472 640 aaPredicted RBP26.4■■□□□ 1.82
CCDC88B-203ENST00000359902 SULT6B1Q6IMI4 303 aa26.39■■□□□ 1.82
CCDC88B-203ENST00000359902 PLPPR3Q6T4P5 718 aa26.39■■□□□ 1.82
CCDC88B-203ENST00000359902 USP31Q70CQ4 1352 aa26.39■■□□□ 1.82
CCDC88B-203ENST00000359902 DCTN1Q14203 1278 aa26.39■■□□□ 1.81
CCDC88B-203ENST00000359902 C8orf58Q8NAV2 365 aa26.39■■□□□ 1.81
CCDC88B-203ENST00000359902 TWISTNBQ3B726 338 aaPredicted RBP26.38■■□□□ 1.81
CCDC88B-203ENST00000359902 PTCH1Q13635 1447 aa26.38■■□□□ 1.81
CCDC88B-203ENST00000359902 NALCNQ8IZF0 1738 aa26.37■■□□□ 1.81
CCDC88B-203ENST00000359902 HSP90AB2PQ58FF8 381 aa26.37■■□□□ 1.81
CCDC88B-203ENST00000359902 THEMISQ8N1K5 641 aaPredicted RBP26.37■■□□□ 1.81
CCDC88B-203ENST00000359902 PIK3R4Q99570 1358 aa26.37■■□□□ 1.81
CCDC88B-203ENST00000359902 ZBTB7BO15156 539 aaPredicted RBP26.36■■□□□ 1.81
CCDC88B-203ENST00000359902 PEAK1Q9H792 1746 aa26.35■■□□□ 1.81
CCDC88B-203ENST00000359902 TTC21AQ8NDW8 1320 aa26.34■■□□□ 1.81
CCDC88B-203ENST00000359902 FER1L4A9Z1Z3 1794 aa26.33■■□□□ 1.81
CCDC88B-203ENST00000359902 UPF2Q9HAU5 1272 aaKnown RBP26.32■■□□□ 1.8
CCDC88B-203ENST00000359902 TBC1D32Q96NH3 1257 aa26.32■■□□□ 1.8
CCDC88B-203ENST00000359902 ABCC4O15439 1325 aa26.32■■□□□ 1.8
CCDC88B-203ENST00000359902 NUCB1Q02818 461 aa26.31■■□□□ 1.8
CCDC88B-203ENST00000359902 CHMP4BQ9H444 224 aaKnown RBP26.31■■□□□ 1.8
CCDC88B-203ENST00000359902 RGPD1P0DJD0 1748 aa26.31■■□□□ 1.8
CCDC88B-203ENST00000359902 SOX12O15370 315 aa26.3■■□□□ 1.8
CCDC88B-203ENST00000359902 DIP2AQ14689 1571 aa26.3■■□□□ 1.8
CCDC88B-203ENST00000359902 MAP3K19Q56UN5 1328 aa26.29■■□□□ 1.8
CCDC88B-203ENST00000359902 NFKBIBQ15653 356 aa26.28■■□□□ 1.8
CCDC88B-203ENST00000359902 NGDNQ8NEJ9 315 aaKnown RBP26.28■■□□□ 1.8
CCDC88B-203ENST00000359902 CHL1O00533 1208 aa26.28■■□□□ 1.8
CCDC88B-203ENST00000359902 API5Q9BZZ5 524 aaKnown RBP26.27■■□□□ 1.8
CCDC88B-203ENST00000359902 RGPD8O14715 1765 aaPredicted RBP26.27■■□□□ 1.8
CCDC88B-203ENST00000359902 MCM10Q7L590 875 aa26.26■■□□□ 1.79
CCDC88B-203ENST00000359902 BECN1Q14457 450 aa26.25■■□□□ 1.79
CCDC88B-203ENST00000359902 CHD1LQ86WJ1 897 aa26.25■■□□□ 1.79
CCDC88B-203ENST00000359902 C1orf115Q9H7X2 142 aa26.25■■□□□ 1.79
CCDC88B-203ENST00000359902 XRN1Q8IZH2 1706 aaKnown RBP26.25■■□□□ 1.79
CCDC88B-203ENST00000359902 ARHGEF10O15013 1369 aa26.24■■□□□ 1.79
CCDC88B-203ENST00000359902 LNPKQ9C0E8 428 aa26.23■■□□□ 1.79
CCDC88B-203ENST00000359902 SBNO1A3KN83 1393 aa26.23■■□□□ 1.79
CCDC88B-203ENST00000359902 FLT4P35916 1363 aa26.22■■□□□ 1.79
CCDC88B-203ENST00000359902 KCNA6P17658 529 aa26.22■■□□□ 1.79
CCDC88B-203ENST00000359902 KRT24Q2M2I5 525 aa26.22■■□□□ 1.79
CCDC88B-203ENST00000359902 SIRT2Q8IXJ6 389 aa26.22■■□□□ 1.79
CCDC88B-203ENST00000359902 GCC1Q96CN9 775 aa26.22■■□□□ 1.79
CCDC88B-203ENST00000359902 KIAA0232Q92628 1395 aa26.2■■□□□ 1.79
CCDC88B-203ENST00000359902 HAP1P54257 671 aaPredicted RBP26.2■■□□□ 1.78
CCDC88B-203ENST00000359902 CRB1P82279 1406 aa26.2■■□□□ 1.78
CCDC88B-203ENST00000359902 FMN2Q9NZ56 1722 aa26.2■■□□□ 1.78
CCDC88B-203ENST00000359902 KIF24Q5T7B8 1368 aa26.19■■□□□ 1.78
CCDC88B-203ENST00000359902 ANKARQ7Z5J8 1434 aa26.19■■□□□ 1.78
CCDC88B-203ENST00000359902 PIK3C2AO00443 1686 aa26.19■■□□□ 1.78
CCDC88B-203ENST00000359902 RIMS1Q86UR5 1692 aaKnown RBP26.18■■□□□ 1.78
CCDC88B-203ENST00000359902 AMPHP49418 695 aa26.18■■□□□ 1.78
CCDC88B-203ENST00000359902 ANKRD45Q5TZF3 282 aa26.18■■□□□ 1.78
CCDC88B-203ENST00000359902 KDRP35968 1356 aa26.18■■□□□ 1.78
CCDC88B-203ENST00000359902 MTHFSDQ2M296 383 aaKnown RBP26.17■■□□□ 1.78
CCDC88B-203ENST00000359902 FOXO3O43524 673 aa26.17■■□□□ 1.78
CCDC88B-203ENST00000359902 EYA1Q99502 592 aa26.17■■□□□ 1.78
CCDC88B-203ENST00000359902 MFAP1P55081 439 aaKnown RBP26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms