RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 ZNF692Q9BU19 519 aaPredicted RBP28.14■■■□□ 2.1
UPF3A-201ENST00000351487 TMEM57Q8N5G2 664 aa28.14■■■□□ 2.09
UPF3A-201ENST00000351487 ZRANB1Q9UGI0 708 aa28.14■■■□□ 2.09
UPF3A-201ENST00000351487 ROBO2Q9HCK4 1378 aa28.14■■■□□ 2.09
UPF3A-201ENST00000351487 PRR36Q9H6K5 1346 aa28.13■■■□□ 2.09
UPF3A-201ENST00000351487 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.13■■■□□ 2.09
UPF3A-201ENST00000351487 ZBTB40Q9NUA8 1239 aa28.12■■■□□ 2.09
UPF3A-201ENST00000351487 NCKAP5LQ9HCH0 1330 aa28.12■■■□□ 2.09
UPF3A-201ENST00000351487 IFT57Q9NWB7 429 aa28.11■■■□□ 2.09
UPF3A-201ENST00000351487 PLEKHG1Q9ULL1 1385 aa28.11■■■□□ 2.09
UPF3A-201ENST00000351487 ZNF853P0CG23 659 aa28.1■■■□□ 2.09
UPF3A-201ENST00000351487 SMC5Q8IY18 1101 aa28.1■■■□□ 2.09
UPF3A-201ENST00000351487 GNAI1P63096 354 aa28.09■■■□□ 2.09
UPF3A-201ENST00000351487 PTCH1Q13635 1447 aa28.09■■■□□ 2.09
UPF3A-201ENST00000351487 NALCNQ8IZF0 1738 aa28.09■■■□□ 2.09
UPF3A-201ENST00000351487 LMOD3Q0VAK6 560 aa28.08■■■□□ 2.09
UPF3A-201ENST00000351487 PIK3R4Q99570 1358 aa28.07■■■□□ 2.08
UPF3A-201ENST00000351487 NFKBIBQ15653 356 aa28.07■■■□□ 2.08
UPF3A-201ENST00000351487 VAMP4O75379 141 aa28.06■■■□□ 2.08
UPF3A-201ENST00000351487 UPF2Q9HAU5 1272 aaKnown RBP28.06■■■□□ 2.08
UPF3A-201ENST00000351487 RRS1Q15050 365 aaKnown RBP28.06■■■□□ 2.08
UPF3A-201ENST00000351487 ARHGAP45Q92619 1136 aa28.06■■■□□ 2.08
UPF3A-201ENST00000351487 OVOS2A0A0J9YW53 1432 aa28.05■■■□□ 2.08
UPF3A-201ENST00000351487 OVOS2Q6IE36 1432 aa28.05■■■□□ 2.08
UPF3A-201ENST00000351487 TBC1D32Q96NH3 1257 aa28.05■■■□□ 2.08
UPF3A-201ENST00000351487 THUMPD2Q9BTF0 503 aaKnown RBP28.05■■■□□ 2.08
UPF3A-201ENST00000351487 MRPL50Q8N5N7 158 aaKnown RBP28.03■■■□□ 2.08
UPF3A-201ENST00000351487 MBIPQ9NS73 344 aa28.03■■■□□ 2.08
UPF3A-201ENST00000351487 BECN1Q14457 450 aa28.02■■■□□ 2.08
UPF3A-201ENST00000351487 CFAP44Q96MT7 982 aa28.02■■■□□ 2.08
UPF3A-201ENST00000351487 PLEKHG3A1L390 1219 aa28.01■■■□□ 2.07
UPF3A-201ENST00000351487 USP6P35125 1406 aa28.01■■■□□ 2.07
UPF3A-201ENST00000351487 TTC21BQ7Z4L5 1316 aa28.01■■■□□ 2.07
UPF3A-201ENST00000351487 LTKP29376 864 aa28■■■□□ 2.07
UPF3A-201ENST00000351487 RGPD1P0DJD0 1748 aa28■■■□□ 2.07
UPF3A-201ENST00000351487 TSPYL6Q8N831 410 aa27.99■■■□□ 2.07
UPF3A-201ENST00000351487 CHMP4BQ9H444 224 aaKnown RBP27.99■■■□□ 2.07
UPF3A-201ENST00000351487 SLIT1O75093 1534 aa27.99■■■□□ 2.07
UPF3A-201ENST00000351487 PTPRUQ92729 1446 aa27.98■■■□□ 2.07
UPF3A-201ENST00000351487 ACEP12821 1306 aa27.97■■■□□ 2.07
UPF3A-201ENST00000351487 PEAK1Q9H792 1746 aa27.97■■■□□ 2.07
UPF3A-201ENST00000351487 ABCC4O15439 1325 aa27.97■■■□□ 2.07
UPF3A-201ENST00000351487 ARHGAP23Q9P227 1491 aa27.97■■■□□ 2.07
UPF3A-201ENST00000351487 USP31Q70CQ4 1352 aa27.96■■■□□ 2.07
UPF3A-201ENST00000351487 SSH2Q76I76 1423 aa27.95■■■□□ 2.07
UPF3A-201ENST00000351487 NUCB1Q02818 461 aa27.95■■■□□ 2.07
UPF3A-201ENST00000351487 TWISTNBQ3B726 338 aaPredicted RBP27.95■■■□□ 2.07
UPF3A-201ENST00000351487 ZBTB7BO15156 539 aaPredicted RBP27.95■■■□□ 2.06
UPF3A-201ENST00000351487 EIF4A2Q14240 407 aaKnown RBP27.94■■■□□ 2.06
UPF3A-201ENST00000351487 FMN2Q9NZ56 1722 aa27.92■■■□□ 2.06
UPF3A-201ENST00000351487 DIP2AQ14689 1571 aa27.91■■■□□ 2.06
UPF3A-201ENST00000351487 FAM83GA6ND36 823 aa27.91■■■□□ 2.06
UPF3A-201ENST00000351487 C8orf58Q8NAV2 365 aa27.91■■■□□ 2.06
UPF3A-201ENST00000351487 RIMS1Q86UR5 1692 aaKnown RBP27.9■■■□□ 2.06
UPF3A-201ENST00000351487 EID1Q9Y6B2 187 aa27.89■■■□□ 2.06
UPF3A-201ENST00000351487 AEBP1Q8IUX7 1158 aa27.88■■■□□ 2.05
UPF3A-201ENST00000351487 KIF24Q5T7B8 1368 aa27.88■■■□□ 2.05
UPF3A-201ENST00000351487 SULT6B1Q6IMI4 303 aa27.88■■■□□ 2.05
UPF3A-201ENST00000351487 API5Q9BZZ5 524 aaKnown RBP27.88■■■□□ 2.05
UPF3A-201ENST00000351487 ELL2O00472 640 aaPredicted RBP27.87■■■□□ 2.05
UPF3A-201ENST00000351487 CHD1LQ86WJ1 897 aa27.87■■■□□ 2.05
UPF3A-201ENST00000351487 GCC1Q96CN9 775 aa27.87■■■□□ 2.05
UPF3A-201ENST00000351487 TTC21AQ8NDW8 1320 aa27.86■■■□□ 2.05
UPF3A-201ENST00000351487 FER1L4A9Z1Z3 1794 aa27.86■■■□□ 2.05
UPF3A-201ENST00000351487 DCTN1Q14203 1278 aa27.86■■■□□ 2.05
UPF3A-201ENST00000351487 SLC26A8Q96RN1 970 aa27.86■■■□□ 2.05
UPF3A-201ENST00000351487 TBX22Q9Y458 520 aa27.86■■■□□ 2.05
UPF3A-201ENST00000351487 FRAT2O75474 233 aaPredicted RBP27.84■■■□□ 2.05
UPF3A-201ENST00000351487 GSE1Q14687 1217 aa27.84■■■□□ 2.05
UPF3A-201ENST00000351487 TBC1D2Q9BYX2 928 aa27.84■■■□□ 2.05
UPF3A-201ENST00000351487 XRN1Q8IZH2 1706 aaKnown RBP27.84■■■□□ 2.05
UPF3A-201ENST00000351487 CEBPAP49715 358 aaPredicted RBP27.84■■■□□ 2.05
UPF3A-201ENST00000351487 C22orf23Q9BZE7 217 aa27.84■■■□□ 2.05
UPF3A-201ENST00000351487 ARHGEF10O15013 1369 aa27.83■■■□□ 2.05
UPF3A-201ENST00000351487 LNPKQ9C0E8 428 aa27.83■■■□□ 2.05
UPF3A-201ENST00000351487 ANTXR1Q9H6X2 564 aa27.83■■■□□ 2.05
UPF3A-201ENST00000351487 RGPD8O14715 1765 aaPredicted RBP27.83■■■□□ 2.05
UPF3A-201ENST00000351487 KIAA0232Q92628 1395 aa27.83■■■□□ 2.05
UPF3A-201ENST00000351487 HAP1P54257 671 aaPredicted RBP27.83■■■□□ 2.05
UPF3A-201ENST00000351487 AMOTL2Q9Y2J4 779 aa27.83■■■□□ 2.05
UPF3A-201ENST00000351487 NUTM2FA1L443 756 aa27.82■■■□□ 2.04
UPF3A-201ENST00000351487 HSP90AB2PQ58FF8 381 aa27.82■■■□□ 2.04
UPF3A-201ENST00000351487 CHL1O00533 1208 aa27.81■■■□□ 2.04
UPF3A-201ENST00000351487 MFAP1P55081 439 aaKnown RBP27.81■■■□□ 2.04
UPF3A-201ENST00000351487 BMP2KLQ5H9B9 411 aa27.8■■■□□ 2.04
UPF3A-201ENST00000351487 SIRT2Q8IXJ6 389 aa27.79■■■□□ 2.04
UPF3A-201ENST00000351487 C1orf115Q9H7X2 142 aa27.79■■■□□ 2.04
UPF3A-201ENST00000351487 PIK3C2AO00443 1686 aa27.79■■■□□ 2.04
UPF3A-201ENST00000351487 SBNO1A3KN83 1393 aa27.78■■■□□ 2.04
UPF3A-201ENST00000351487 RGS12O14924 1447 aa27.78■■■□□ 2.04
UPF3A-201ENST00000351487 FLT4P35916 1363 aa27.77■■■□□ 2.04
UPF3A-201ENST00000351487 MAP3K19Q56UN5 1328 aa27.77■■■□□ 2.04
UPF3A-201ENST00000351487 CRB1P82279 1406 aa27.77■■■□□ 2.04
UPF3A-201ENST00000351487 KDRP35968 1356 aa27.76■■■□□ 2.04
UPF3A-201ENST00000351487 SLKQ9H2G2 1235 aaPredicted RBP27.76■■■□□ 2.04
UPF3A-201ENST00000351487 ANKRD45Q5TZF3 282 aa27.76■■■□□ 2.03
UPF3A-201ENST00000351487 INTS3Q68E01 1043 aaKnown RBP27.76■■■□□ 2.03
UPF3A-201ENST00000351487 USP54Q70EL1 1684 aa27.75■■■□□ 2.03
UPF3A-201ENST00000351487 ANKARQ7Z5J8 1434 aa27.75■■■□□ 2.03
UPF3A-201ENST00000351487 RBM25P49756 843 aaKnown RBP27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms