RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ALDH1L2Q3SY69 923 aa19.69■□□□□ 0.74
UPF3B-202ENST00000345865 PTPRUQ92729 1446 aa19.69■□□□□ 0.74
UPF3B-202ENST00000345865 RTL5Q5HYW3 569 aaPredicted RBP19.68■□□□□ 0.74
UPF3B-202ENST00000345865 TSPYL6Q8N831 410 aa19.68■□□□□ 0.74
UPF3B-202ENST00000345865 SLC26A8Q96RN1 970 aa19.68■□□□□ 0.74
UPF3B-202ENST00000345865 KIF16BQ96L93 1317 aa19.68■□□□□ 0.74
UPF3B-202ENST00000345865 VAMP4O75379 141 aa19.67■□□□□ 0.74
UPF3B-202ENST00000345865 ZBTB40Q9NUA8 1239 aa19.67■□□□□ 0.74
UPF3B-202ENST00000345865 ACEP12821 1306 aa19.67■□□□□ 0.74
UPF3B-202ENST00000345865 NRKQ7Z2Y5 1582 aa19.67■□□□□ 0.74
UPF3B-202ENST00000345865 ZNF853P0CG23 659 aa19.67■□□□□ 0.74
UPF3B-202ENST00000345865 TTC21BQ7Z4L5 1316 aa19.66■□□□□ 0.74
UPF3B-202ENST00000345865 TOPAZ1Q8N9V7 1692 aa19.66■□□□□ 0.74
UPF3B-202ENST00000345865 HDAC1Q13547 482 aaPredicted RBP19.66■□□□□ 0.74
UPF3B-202ENST00000345865 FAM83GA6ND36 823 aa19.65■□□□□ 0.74
UPF3B-202ENST00000345865 MBIPQ9NS73 344 aa19.65■□□□□ 0.74
UPF3B-202ENST00000345865 IPO8O15397 1037 aaKnown RBP19.64■□□□□ 0.74
UPF3B-202ENST00000345865 BRPF1P55201 1214 aaPredicted RBP19.64■□□□□ 0.74
UPF3B-202ENST00000345865 IFT57Q9NWB7 429 aa19.64■□□□□ 0.73
UPF3B-202ENST00000345865 PLEKHG3A1L390 1219 aa19.63■□□□□ 0.73
UPF3B-202ENST00000345865 ELL2O00472 640 aaPredicted RBP19.63■□□□□ 0.73
UPF3B-202ENST00000345865 AEBP1Q8IUX7 1158 aa19.63■□□□□ 0.73
UPF3B-202ENST00000345865 GNAI1P63096 354 aa19.63■□□□□ 0.73
UPF3B-202ENST00000345865 DCTN1Q14203 1278 aa19.63■□□□□ 0.73
UPF3B-202ENST00000345865 MRPL50Q8N5N7 158 aaKnown RBP19.63■□□□□ 0.73
UPF3B-202ENST00000345865 OVOS2A0A0J9YW53 1432 aa19.62■□□□□ 0.73
UPF3B-202ENST00000345865 OVOS2Q6IE36 1432 aa19.62■□□□□ 0.73
UPF3B-202ENST00000345865 EIF4A2Q14240 407 aaKnown RBP19.62■□□□□ 0.73
UPF3B-202ENST00000345865 PLPPR3Q6T4P5 718 aa19.62■□□□□ 0.73
UPF3B-202ENST00000345865 ZNF428Q96B54 188 aa19.62■□□□□ 0.73
UPF3B-202ENST00000345865 DAXXQ9UER7 740 aaPredicted RBP19.62■□□□□ 0.73
UPF3B-202ENST00000345865 USP6P35125 1406 aa19.61■□□□□ 0.73
UPF3B-202ENST00000345865 CALD1Q05682 793 aaKnown RBP19.61■□□□□ 0.73
UPF3B-202ENST00000345865 SMC5Q8IY18 1101 aa19.6■□□□□ 0.73
UPF3B-202ENST00000345865 C8orf58Q8NAV2 365 aa19.6■□□□□ 0.73
UPF3B-202ENST00000345865 CFAP44Q96MT7 982 aa19.6■□□□□ 0.73
UPF3B-202ENST00000345865 USP35Q9P2H5 1018 aa19.6■□□□□ 0.73
UPF3B-202ENST00000345865 PEAK1Q9H792 1746 aa19.6■□□□□ 0.73
UPF3B-202ENST00000345865 AMOTL2Q9Y2J4 779 aa19.59■□□□□ 0.73
UPF3B-202ENST00000345865 SULT6B1Q6IMI4 303 aa19.59■□□□□ 0.73
UPF3B-202ENST00000345865 SSH2Q76I76 1423 aa19.58■□□□□ 0.73
UPF3B-202ENST00000345865 SLIT1O75093 1534 aa19.58■□□□□ 0.72
UPF3B-202ENST00000345865 TWISTNBQ3B726 338 aaPredicted RBP19.58■□□□□ 0.72
UPF3B-202ENST00000345865 HSP90AB2PQ58FF8 381 aa19.58■□□□□ 0.72
UPF3B-202ENST00000345865 NALCNQ8IZF0 1738 aa19.58■□□□□ 0.72
UPF3B-202ENST00000345865 ARHGAP23Q9P227 1491 aa19.58■□□□□ 0.72
UPF3B-202ENST00000345865 EID1Q9Y6B2 187 aa19.58■□□□□ 0.72
UPF3B-202ENST00000345865 PTCH1Q13635 1447 aa19.57■□□□□ 0.72
UPF3B-202ENST00000345865 ZBTB7BO15156 539 aaPredicted RBP19.57■□□□□ 0.72
UPF3B-202ENST00000345865 LMOD3Q0VAK6 560 aa19.57■□□□□ 0.72
UPF3B-202ENST00000345865 NFKBIBQ15653 356 aa19.57■□□□□ 0.72
UPF3B-202ENST00000345865 PIK3R4Q99570 1358 aa19.56■□□□□ 0.72
UPF3B-202ENST00000345865 ARHGAP45Q92619 1136 aa19.56■□□□□ 0.72
UPF3B-202ENST00000345865 SOX12O15370 315 aa19.56■□□□□ 0.72
UPF3B-202ENST00000345865 RGPD8O14715 1765 aaPredicted RBP19.55■□□□□ 0.72
UPF3B-202ENST00000345865 USP31Q70CQ4 1352 aa19.55■□□□□ 0.72
UPF3B-202ENST00000345865 TBC1D32Q96NH3 1257 aa19.55■□□□□ 0.72
UPF3B-202ENST00000345865 TBX22Q9Y458 520 aa19.54■□□□□ 0.72
UPF3B-202ENST00000345865 RGPD1P0DJD0 1748 aa19.54■□□□□ 0.72
UPF3B-202ENST00000345865 C1orf115Q9H7X2 142 aa19.53■□□□□ 0.72
UPF3B-202ENST00000345865 ABCC4O15439 1325 aa19.53■□□□□ 0.72
UPF3B-202ENST00000345865 NUCB1Q02818 461 aa19.52■□□□□ 0.72
UPF3B-202ENST00000345865 FER1L4A9Z1Z3 1794 aa19.52■□□□□ 0.72
UPF3B-202ENST00000345865 KRT24Q2M2I5 525 aa19.52■□□□□ 0.71
UPF3B-202ENST00000345865 BCL11AQ9H165 835 aa19.52■□□□□ 0.71
UPF3B-202ENST00000345865 MCM10Q7L590 875 aa19.51■□□□□ 0.71
UPF3B-202ENST00000345865 MAP3K19Q56UN5 1328 aa19.5■□□□□ 0.71
UPF3B-202ENST00000345865 DIP2AQ14689 1571 aa19.5■□□□□ 0.71
UPF3B-202ENST00000345865 SIRT2Q8IXJ6 389 aa19.5■□□□□ 0.71
UPF3B-202ENST00000345865 LNPKQ9C0E8 428 aa19.5■□□□□ 0.71
UPF3B-202ENST00000345865 UPF2Q9HAU5 1272 aaKnown RBP19.49■□□□□ 0.71
UPF3B-202ENST00000345865 CHL1O00533 1208 aa19.48■□□□□ 0.71
UPF3B-202ENST00000345865 CHD1LQ86WJ1 897 aa19.48■□□□□ 0.71
UPF3B-202ENST00000345865 THEMISQ8N1K5 641 aaPredicted RBP19.48■□□□□ 0.71
UPF3B-202ENST00000345865 TTC21AQ8NDW8 1320 aa19.48■□□□□ 0.71
UPF3B-202ENST00000345865 NGDNQ8NEJ9 315 aaKnown RBP19.47■□□□□ 0.71
UPF3B-202ENST00000345865 RIMS1Q86UR5 1692 aaKnown RBP19.46■□□□□ 0.71
UPF3B-202ENST00000345865 FMN2Q9NZ56 1722 aa19.46■□□□□ 0.71
UPF3B-202ENST00000345865 FOXO3O43524 673 aa19.46■□□□□ 0.71
UPF3B-202ENST00000345865 XRN1Q8IZH2 1706 aaKnown RBP19.46■□□□□ 0.71
UPF3B-202ENST00000345865 FRAT2O75474 233 aaPredicted RBP19.46■□□□□ 0.71
UPF3B-202ENST00000345865 PIK3C2AO00443 1686 aa19.46■□□□□ 0.71
UPF3B-202ENST00000345865 MFAP1P55081 439 aaKnown RBP19.45■□□□□ 0.7
UPF3B-202ENST00000345865 KCNA6P17658 529 aa19.45■□□□□ 0.7
UPF3B-202ENST00000345865 BECN1Q14457 450 aa19.45■□□□□ 0.7
UPF3B-202ENST00000345865 TBC1D2Q9BYX2 928 aa19.45■□□□□ 0.7
UPF3B-202ENST00000345865 API5Q9BZZ5 524 aaKnown RBP19.45■□□□□ 0.7
UPF3B-202ENST00000345865 CRB1P82279 1406 aa19.44■□□□□ 0.7
UPF3B-202ENST00000345865 ANKRD45Q5TZF3 282 aa19.43■□□□□ 0.7
UPF3B-202ENST00000345865 RGS12O14924 1447 aa19.43■□□□□ 0.7
UPF3B-202ENST00000345865 SBNO1A3KN83 1393 aa19.43■□□□□ 0.7
UPF3B-202ENST00000345865 ARHGEF10O15013 1369 aa19.43■□□□□ 0.7
UPF3B-202ENST00000345865 FLT4P35916 1363 aa19.43■□□□□ 0.7
UPF3B-202ENST00000345865 MTHFSDQ2M296 383 aaKnown RBP19.43■□□□□ 0.7
UPF3B-202ENST00000345865 C22orf23Q9BZE7 217 aa19.43■□□□□ 0.7
UPF3B-202ENST00000345865 MIS18AQ9NYP9 233 aa19.43■□□□□ 0.7
UPF3B-202ENST00000345865 GCC1Q96CN9 775 aa19.42■□□□□ 0.7
UPF3B-202ENST00000345865 CHMP4BQ9H444 224 aaKnown RBP19.42■□□□□ 0.7
UPF3B-202ENST00000345865 SLKQ9H2G2 1235 aaPredicted RBP19.42■□□□□ 0.7
UPF3B-202ENST00000345865 CEP170BQ9Y4F5 1589 aaPredicted RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms