RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PAXBP1Q9Y5B6 917 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 CYP46A1Q9Y6A2 500 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 KIF2AO00139 706 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-203ENST00000343508 UBTFL1P0CB47 393 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-203ENST00000343508 TRIM27P14373 513 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 NUCB1Q02818 461 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 COL17A1Q9UMD9 1497 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-203ENST00000343508 BAG4O95429 457 aaKnown RBP5.71□□□□□ -1.5
CSMD3-203ENST00000343508 SYNE3Q6ZMZ3 975 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 OLFM4Q6UX06 510 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 TERF1P54274 439 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 KIAA0556O60303 1618 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 DDX58O95786 925 aaKnown RBP5.7□□□□□ -1.5
CSMD3-203ENST00000343508 IL16Q14005 1332 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 GPATCH8Q9UKJ3 1502 aaKnown RBP5.7□□□□□ -1.5
CSMD3-203ENST00000343508 PRKAR2BP31323 418 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 TMPOP42166 694 aaKnown RBP5.7□□□□□ -1.5
CSMD3-203ENST00000343508 NUTM2DQ5VT03 806 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-203ENST00000343508 SLC12A5Q9H2X9 1139 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 GGNBP2Q9H3C7 697 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 MINK1Q8N4C8 1332 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-203ENST00000343508 CLASRPQ8N2M8 674 aaKnown RBP5.7□□□□□ -1.5
CSMD3-203ENST00000343508 TSPYL4Q9UJ04 414 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 SHANK2Q9UPX8 1470 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 RAB3GAP1Q15042 981 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 SDF4Q9BRK5 362 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 ZKSCAN5Q9Y2L8 839 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 TBC1D9Q6ZT07 1266 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 PANK2Q9BZ23 570 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 ATAD2Q6PL18 1390 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 NUP62CLQ9H1M0 184 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 FIBPO43427 364 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 MAP3K11Q16584 847 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 ERC1Q8IUD2 1116 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 SMC5Q8IY18 1101 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 CALCOCO1Q9P1Z2 691 aa5.7□□□□□ -1.5
CSMD3-203ENST00000343508 NGDNQ8NEJ9 315 aaKnown RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 ZNF396Q96N95 335 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 RUFY1Q96T51 708 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 SPATA31E1Q6ZUB1 1445 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 RBM25P49756 843 aaKnown RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 GTPBP4Q9BZE4 634 aaKnown RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 XPCQ01831 940 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 SYNMO15061 1565 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 UBE2HP62256 183 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 EIF3JO75822 258 aaKnown RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 TEFQ10587 303 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 ZSCAN31Q96LW9 406 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 PZPP20742 1482 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 CPLX1O14810 134 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 G3BP1Q13283 466 aaKnown RBP eCLIP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 LARP1BQ659C4 914 aaKnown RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 SSH1Q8WYL5 1049 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 NEMFO60524 1076 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 OFD1O75665 1012 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 PPP4R3BQ5MIZ7 849 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 SMAP1Q8IYB5 467 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-203ENST00000343508 CABP2Q9NPB3 220 aa5.69□□□□□ -1.5
CSMD3-203ENST00000343508 TRDNQ13061 729 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 LMOD2Q6P5Q4 547 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 KIF18AQ8NI77 898 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 ZNF692Q9BU19 519 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-203ENST00000343508 RPGRIP1LQ68CZ1 1315 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 PES1O00541 588 aaKnown RBP5.68□□□□□ -1.5
CSMD3-203ENST00000343508 ADCY5O95622 1261 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 CALRP27797 417 aaKnown RBP5.68□□□□□ -1.5
CSMD3-203ENST00000343508 SPATA32Q96LK8 384 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 PLB1Q6P1J6 1458 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 CCDC94Q9BW85 323 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-203ENST00000343508 ADGRL2O95490 1459 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 PTPRCP08575 1304 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 DHX16O60231 1041 aaKnown RBP5.68□□□□□ -1.5
CSMD3-203ENST00000343508 CAVIN2O95810 425 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 C1orf141Q5JVX7 400 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 SSFA2P28290 1259 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 CREBRFQ8IUR6 639 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 PTPN14Q15678 1187 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 TAF7LQ5H9L4 462 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 SLC4A2P04920 1241 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 NOL7Q9UMY1 257 aaKnown RBP5.68□□□□□ -1.5
CSMD3-203ENST00000343508 ERLIN1O75477 346 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 SMARCE1Q969G3 411 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 RAB11FIP3O75154 756 aa5.68□□□□□ -1.5
CSMD3-203ENST00000343508 RASSF8Q8NHQ8 419 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 ARHGAP45Q92619 1136 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 PPP6R1Q9UPN7 881 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 GRIN2AQ12879 1464 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 KIF1BO60333 1816 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 SMTNL1A8MU46 457 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 TMEM132EQ6IEE7 984 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 CBFA2T2O43439 604 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 DACH1Q9UI36 760 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 PCDHB15Q9Y5E8 787 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 PER1O15534 1290 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-203ENST00000343508 PLEKHG5O94827 1062 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 SCAND2PQ9GZW5 306 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-203ENST00000343508 NFE2L2Q16236 605 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 GAS2L2Q8NHY3 880 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 RRAGDQ9NQL2 400 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-203ENST00000343508 POLR3AO14802 1390 aaPredicted RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms