RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 LRRC7Q96NW7 1537 aa11.96□□□□□ -0.5
HOXA1-201ENST00000343060 AK9Q5TCS8 1911 aa11.95□□□□□ -0.5
HOXA1-201ENST00000343060 RPGRIP1LQ68CZ1 1315 aa11.95□□□□□ -0.5
HOXA1-201ENST00000343060 ANKRD45Q5TZF3 282 aa11.95□□□□□ -0.5
HOXA1-201ENST00000343060 RBSNQ9H1K0 784 aa11.95□□□□□ -0.5
HOXA1-201ENST00000343060 ZKSCAN5Q9Y2L8 839 aa11.95□□□□□ -0.5
HOXA1-201ENST00000343060 PIK3C2BO00750 1634 aa11.95□□□□□ -0.5
HOXA1-201ENST00000343060 ABCC4O15439 1325 aa11.95□□□□□ -0.5
HOXA1-201ENST00000343060 KIDINS220Q9ULH0 1771 aa11.95□□□□□ -0.5
HOXA1-201ENST00000343060 CLTCQ00610 1675 aaKnown RBP11.95□□□□□ -0.5
HOXA1-201ENST00000343060 A0A1W2PP64 1363 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 CSPP1Q1MSJ5 1256 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 CWC22Q9HCG8 908 aaKnown RBP11.94□□□□□ -0.5
HOXA1-201ENST00000343060 CAMSAP1Q5T5Y3 1602 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 KNDC1Q76NI1 1749 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 DYNC1I1O14576 645 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 CAVIN1Q6NZI2 390 aaKnown RBP11.94□□□□□ -0.5
HOXA1-201ENST00000343060 SIRT2Q8IXJ6 389 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 R3HCC1Q9Y3T6 440 aaKnown RBP11.94□□□□□ -0.5
HOXA1-201ENST00000343060 ZFYVE9O95405 1425 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 FAM135BQ49AJ0 1406 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 KIF24Q5T7B8 1368 aa11.94□□□□□ -0.5
HOXA1-201ENST00000343060 GSPT1P15170 499 aaKnown RBP11.93□□□□□ -0.5
HOXA1-201ENST00000343060 MCTP1Q6DN14 999 aa11.93□□□□□ -0.5
HOXA1-201ENST00000343060 FRMPD1Q5SYB0 1578 aa11.93□□□□□ -0.5
HOXA1-201ENST00000343060 MRPL50Q8N5N7 158 aaKnown RBP11.93□□□□□ -0.5
HOXA1-201ENST00000343060 NPATQ14207 1427 aa11.92□□□□□ -0.5
HOXA1-201ENST00000343060 ASXL2Q76L83 1435 aa11.92□□□□□ -0.5
HOXA1-201ENST00000343060 UQCRHLA0A096LP55 91 aa11.92□□□□□ -0.5
HOXA1-201ENST00000343060 U2SURPO15042 1029 aaKnown RBP11.92□□□□□ -0.5
HOXA1-201ENST00000343060 UQCRHP07919 91 aa11.92□□□□□ -0.5
HOXA1-201ENST00000343060 HECW2Q9P2P5 1572 aa11.92□□□□□ -0.5
HOXA1-201ENST00000343060 PRIM1P49642 420 aaKnown RBP11.92□□□□□ -0.5
HOXA1-201ENST00000343060 SMAP1Q8IYB5 467 aaPredicted RBP11.92□□□□□ -0.5
HOXA1-201ENST00000343060 CD163L1Q9NR16 1453 aa11.92□□□□□ -0.5
HOXA1-201ENST00000343060 NEXMIFQ5QGS0 1516 aa11.91□□□□□ -0.5
HOXA1-201ENST00000343060 KIF20BQ96Q89 1820 aa11.91□□□□□ -0.5
HOXA1-201ENST00000343060 RBM10P98175 930 aaKnown RBP11.91□□□□□ -0.5
HOXA1-201ENST00000343060 LRSAM1Q6UWE0 723 aa11.91□□□□□ -0.5
HOXA1-201ENST00000343060 GPT2Q8TD30 523 aa11.91□□□□□ -0.5
HOXA1-201ENST00000343060 PLEKHM2Q8IWE5 1019 aa11.91□□□□□ -0.5
HOXA1-201ENST00000343060 USP26Q9BXU7 913 aa11.91□□□□□ -0.5
HOXA1-201ENST00000343060 CCDC39Q9UFE4 941 aa11.91□□□□□ -0.5
HOXA1-201ENST00000343060 XPCQ01831 940 aaPredicted RBP11.9□□□□□ -0.5
HOXA1-201ENST00000343060 TTC22Q5TAA0 569 aa11.9□□□□□ -0.5
HOXA1-201ENST00000343060 SASS6Q6UVJ0 657 aa11.9□□□□□ -0.5
HOXA1-201ENST00000343060 VAMP4O75379 141 aa11.9□□□□□ -0.5
HOXA1-201ENST00000343060 TMEM132EQ6IEE7 984 aa11.9□□□□□ -0.5
HOXA1-201ENST00000343060 ZDHHC9Q9Y397 364 aa11.9□□□□□ -0.5
HOXA1-201ENST00000343060 FAM13BQ9NYF5 915 aa11.89□□□□□ -0.51
HOXA1-201ENST00000343060 ABCC3O15438 1527 aa11.89□□□□□ -0.51
HOXA1-201ENST00000343060 FCHSD2O94868 740 aa11.89□□□□□ -0.51
HOXA1-201ENST00000343060 PKP1Q13835 747 aa11.89□□□□□ -0.51
HOXA1-201ENST00000343060 C1orf115Q9H7X2 142 aa11.89□□□□□ -0.51
HOXA1-201ENST00000343060 ATAD2Q6PL18 1390 aa11.88□□□□□ -0.51
HOXA1-201ENST00000343060 DIAPH1O60610 1272 aaKnown RBP11.88□□□□□ -0.51
HOXA1-201ENST00000343060 DCTPP1Q9H773 170 aa11.88□□□□□ -0.51
HOXA1-201ENST00000343060 TMEM63CQ9P1W3 806 aa11.88□□□□□ -0.51
HOXA1-201ENST00000343060 MBD3O95983 291 aa11.87□□□□□ -0.51
HOXA1-201ENST00000343060 INTS3Q68E01 1043 aaKnown RBP11.87□□□□□ -0.51
HOXA1-201ENST00000343060 GGNBP2Q9H3C7 697 aa11.87□□□□□ -0.51
HOXA1-201ENST00000343060 CABP2Q9NPB3 220 aa11.87□□□□□ -0.51
HOXA1-201ENST00000343060 RBM27Q9P2N5 1060 aaKnown RBP11.87□□□□□ -0.51
HOXA1-201ENST00000343060 ATP10DQ9P241 1426 aa11.87□□□□□ -0.51
HOXA1-201ENST00000343060 FYB1O15117 783 aa11.87□□□□□ -0.51
HOXA1-201ENST00000343060 ZNF853P0CG23 659 aa11.87□□□□□ -0.51
HOXA1-201ENST00000343060 NCLP19338 710 aaKnown RBP11.87□□□□□ -0.51
HOXA1-201ENST00000343060 ST18O60284 1047 aa11.86□□□□□ -0.51
HOXA1-201ENST00000343060 PRPF40AO75400 957 aaKnown RBP11.86□□□□□ -0.51
HOXA1-201ENST00000343060 IFT57Q9NWB7 429 aa11.86□□□□□ -0.51
HOXA1-201ENST00000343060 PTPRMP28827 1452 aa11.86□□□□□ -0.51
HOXA1-201ENST00000343060 API5Q9BZZ5 524 aaKnown RBP11.86□□□□□ -0.51
HOXA1-201ENST00000343060 SIGLEC1Q9BZZ2 1709 aa11.85□□□□□ -0.51
HOXA1-201ENST00000343060 NFE2L2Q16236 605 aa11.85□□□□□ -0.51
HOXA1-201ENST00000343060 ZGPATQ8N5A5 531 aaKnown RBP11.85□□□□□ -0.51
HOXA1-201ENST00000343060 GNAI1P63096 354 aa11.84□□□□□ -0.51
HOXA1-201ENST00000343060 SYCE3A1L190 88 aa11.84□□□□□ -0.51
HOXA1-201ENST00000343060 CHGAP10645 457 aaKnown RBP11.84□□□□□ -0.51
HOXA1-201ENST00000343060 UTP14CQ5TAP6 766 aaKnown RBP11.84□□□□□ -0.51
HOXA1-201ENST00000343060 TSPYL6Q8N831 410 aa11.84□□□□□ -0.51
HOXA1-201ENST00000343060 MYRIPQ8NFW9 859 aa11.84□□□□□ -0.51
HOXA1-201ENST00000343060 TERF2IPQ9NYB0 399 aa11.84□□□□□ -0.51
HOXA1-201ENST00000343060 PRKAR2BP31323 418 aa11.83□□□□□ -0.52
HOXA1-201ENST00000343060 CCDC94Q9BW85 323 aaPredicted RBP11.83□□□□□ -0.52
HOXA1-201ENST00000343060 NSFL1CQ9UNZ2 370 aaKnown RBP11.83□□□□□ -0.52
HOXA1-201ENST00000343060 TUBGCP6Q96RT7 1819 aa11.83□□□□□ -0.52
HOXA1-201ENST00000343060 CPSF1Q10570 1443 aaKnown RBP11.83□□□□□ -0.52
HOXA1-201ENST00000343060 GTF2F1P35269 517 aaKnown RBP eCLIP11.83□□□□□ -0.52
HOXA1-201ENST00000343060 ANKRD44Q8N8A2 993 aa11.83□□□□□ -0.52
HOXA1-201ENST00000343060 RGS12O14924 1447 aa11.82□□□□□ -0.52
HOXA1-201ENST00000343060 REC8O95072 547 aa11.82□□□□□ -0.52
HOXA1-201ENST00000343060 BRD1O95696 1058 aa11.82□□□□□ -0.52
HOXA1-201ENST00000343060 SDSP20132 328 aa11.82□□□□□ -0.52
HOXA1-201ENST00000343060 KIAA2012Q0VF49 1180 aa11.82□□□□□ -0.52
HOXA1-201ENST00000343060 DLG5Q8TDM6 1919 aa11.82□□□□□ -0.52
HOXA1-201ENST00000343060 CFAP65Q6ZU64 1925 aaKnown RBP11.82□□□□□ -0.52
HOXA1-201ENST00000343060 VGFO15240 615 aaPredicted RBP11.82□□□□□ -0.52
HOXA1-201ENST00000343060 CASC1Q6TDU7 716 aa11.82□□□□□ -0.52
HOXA1-201ENST00000343060 PRIMPOLQ96LW4 560 aa11.82□□□□□ -0.52
HOXA1-201ENST00000343060 MBIPQ9NS73 344 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms