RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 ARHGEF12Q9NZN5 1544 aa8.67□□□□□ -1.02
VCAN-202ENST00000342785 FIBPO43427 364 aa8.67□□□□□ -1.02
VCAN-202ENST00000342785 BMP2KLQ5H9B9 411 aa8.67□□□□□ -1.02
VCAN-202ENST00000342785 SMARCA5O60264 1052 aaPredicted RBP8.67□□□□□ -1.02
VCAN-202ENST00000342785 GTF2E1P29083 439 aaPredicted RBP8.67□□□□□ -1.02
VCAN-202ENST00000342785 DISP1Q96F81 1524 aa8.67□□□□□ -1.02
VCAN-202ENST00000342785 F6X3S4 739 aa8.67□□□□□ -1.02
VCAN-202ENST00000342785 KDM5BQ9UGL1 1544 aa8.67□□□□□ -1.02
VCAN-202ENST00000342785 HDAC1Q13547 482 aaPredicted RBP8.66□□□□□ -1.02
VCAN-202ENST00000342785 UPF3BQ9BZI7 483 aaKnown RBP8.66□□□□□ -1.02
VCAN-202ENST00000342785 ANO8Q9HCE9 1232 aaPredicted RBP8.66□□□□□ -1.02
VCAN-202ENST00000342785 FAM83GA6ND36 823 aa8.66□□□□□ -1.02
VCAN-202ENST00000342785 TULP1O00294 542 aaPredicted RBP8.66□□□□□ -1.02
VCAN-202ENST00000342785 SYCP2Q9BX26 1530 aa8.66□□□□□ -1.02
VCAN-202ENST00000342785 PSMA5P28066 241 aa8.66□□□□□ -1.02
VCAN-202ENST00000342785 MBIPQ9NS73 344 aa8.66□□□□□ -1.02
VCAN-202ENST00000342785 ASXL1Q8IXJ9 1541 aa8.66□□□□□ -1.02
VCAN-202ENST00000342785 ESPNB1AK53 854 aa8.66□□□□□ -1.02
VCAN-202ENST00000342785 APPP05067 770 aa8.66□□□□□ -1.02
VCAN-202ENST00000342785 EVA1CP58658 441 aa8.66□□□□□ -1.02
VCAN-202ENST00000342785 PIK3C2GO75747 1445 aa8.65□□□□□ -1.02
VCAN-202ENST00000342785 PDCP20941 246 aa8.65□□□□□ -1.02
VCAN-202ENST00000342785 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.65□□□□□ -1.02
VCAN-202ENST00000342785 SHANK2Q9UPX8 1470 aa8.65□□□□□ -1.02
VCAN-202ENST00000342785 ANKRD36BQ8N2N9 1353 aa8.65□□□□□ -1.02
VCAN-202ENST00000342785 CCDC73Q6ZRK6 1079 aa8.65□□□□□ -1.02
VCAN-202ENST00000342785 ERC1Q8IUD2 1116 aa8.65□□□□□ -1.02
VCAN-202ENST00000342785 VSIG10Q8N0Z9 540 aa8.65□□□□□ -1.02
VCAN-202ENST00000342785 R3HCC1Q9Y3T6 440 aaKnown RBP8.65□□□□□ -1.02
VCAN-202ENST00000342785 KIAA0556O60303 1618 aa8.65□□□□□ -1.02
VCAN-202ENST00000342785 MAP4K4O95819 1239 aaPredicted RBP8.65□□□□□ -1.03
VCAN-202ENST00000342785 CCDC173Q0VFZ6 552 aa8.65□□□□□ -1.03
VCAN-202ENST00000342785 TRDNQ13061 729 aa8.65□□□□□ -1.03
VCAN-202ENST00000342785 DMRT2Q9Y5R5 561 aa8.65□□□□□ -1.03
VCAN-202ENST00000342785 WDR33Q9C0J8 1336 aaKnown RBP8.65□□□□□ -1.03
VCAN-202ENST00000342785 MX1P20591 662 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 SASS6Q6UVJ0 657 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 TBC1D9Q6ZT07 1266 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 ARHGAP45Q92619 1136 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 DUOX2Q9NRD8 1548 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 ATF3P18847 181 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 FOSBP53539 338 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 PROSER2Q86WR7 435 aaPredicted RBP8.64□□□□□ -1.03
VCAN-202ENST00000342785 PUS7Q96PZ0 661 aaKnown RBP8.64□□□□□ -1.03
VCAN-202ENST00000342785 GNAT3A8MTJ3 354 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 TNPO1Q92973 898 aaKnown RBP8.64□□□□□ -1.03
VCAN-202ENST00000342785 CYP46A1Q9Y6A2 500 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 MAGI3Q5TCQ9 1506 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 ADGRL2O95490 1459 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 COL17A1Q9UMD9 1497 aaPredicted RBP8.64□□□□□ -1.03
VCAN-202ENST00000342785 ADAMTS12P58397 1594 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 WASHC4Q2M389 1173 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 SYNE3Q6ZMZ3 975 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 NUTM1Q86Y26 1132 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 RASSF8Q8NHQ8 419 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 SIL1Q9H173 461 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 CCDC39Q9UFE4 941 aa8.64□□□□□ -1.03
VCAN-202ENST00000342785 SSFA2P28290 1259 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 DNAJC2Q99543 621 aaKnown RBP8.63□□□□□ -1.03
VCAN-202ENST00000342785 A2MP01023 1474 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 HIP1O00291 1037 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 TSPY26PQ9H489 355 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 POLKQ9UBT6 870 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 RALYLQ86SE5 291 aaKnown RBP8.63□□□□□ -1.03
VCAN-202ENST00000342785 NPC1L1Q9UHC9 1359 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 SEC24BO95487 1268 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 CWC27Q6UX04 472 aaKnown RBP8.63□□□□□ -1.03
VCAN-202ENST00000342785 DENND4BO75064 1496 aaPredicted RBP8.63□□□□□ -1.03
VCAN-202ENST00000342785 CREBRFQ8IUR6 639 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 MPNDQ8N594 471 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 SDF4Q9BRK5 362 aa8.63□□□□□ -1.03
VCAN-202ENST00000342785 ZNF592Q92610 1267 aa8.62□□□□□ -1.03
VCAN-202ENST00000342785 NUCB1Q02818 461 aa8.62□□□□□ -1.03
VCAN-202ENST00000342785 SYTL4Q96C24 671 aaPredicted RBP8.62□□□□□ -1.03
VCAN-202ENST00000342785 TAF7Q15545 349 aaPredicted RBP8.62□□□□□ -1.03
VCAN-202ENST00000342785 AKAP17AQ02040 695 aaKnown RBP8.62□□□□□ -1.03
VCAN-202ENST00000342785 FLIIQ13045 1269 aa8.62□□□□□ -1.03
VCAN-202ENST00000342785 AACSQ86V21 672 aa8.62□□□□□ -1.03
VCAN-202ENST00000342785 SMC5Q8IY18 1101 aa8.62□□□□□ -1.03
VCAN-202ENST00000342785 HSP90AB2PQ58FF8 381 aa8.62□□□□□ -1.03
VCAN-202ENST00000342785 TATP17735 454 aaPredicted RBP8.61□□□□□ -1.03
VCAN-202ENST00000342785 TRIM29Q14134 588 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 AMOTL2Q9Y2J4 779 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 C8orf58Q8NAV2 365 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 KIF1BPQ96EK5 621 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 XPCQ01831 940 aaPredicted RBP8.61□□□□□ -1.03
VCAN-202ENST00000342785 FBXW7Q969H0 707 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 DNMT1P26358 1616 aaKnown RBP8.61□□□□□ -1.03
VCAN-202ENST00000342785 BTBD11A6QL63 1104 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 LARP1BQ659C4 914 aaKnown RBP8.61□□□□□ -1.03
VCAN-202ENST00000342785 PHACTR3Q96KR7 559 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 JAKMIP1Q96N16 626 aaKnown RBP8.61□□□□□ -1.03
VCAN-202ENST00000342785 VAMP4O75379 141 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 BLOC1S2Q6QNY1 142 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 TSPYL6Q8N831 410 aa8.61□□□□□ -1.03
VCAN-202ENST00000342785 KDM2BQ8NHM5 1336 aa8.6□□□□□ -1.03
VCAN-202ENST00000342785 ZBTB40Q9NUA8 1239 aa8.6□□□□□ -1.03
VCAN-202ENST00000342785 LRRFIP2Q9Y608 721 aaKnown RBP8.6□□□□□ -1.03
VCAN-202ENST00000342785 CTTNBP2Q8WZ74 1663 aa8.6□□□□□ -1.03
VCAN-202ENST00000342785 GLRX3O76003 335 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms