RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ANP32EQ9BTT0 268 aa12.51□□□□□ -0.41
USP54-201ENST00000339859 ABCC11Q96J66 1382 aa12.51□□□□□ -0.41
USP54-201ENST00000339859 TET3O43151 1660 aa12.51□□□□□ -0.41
USP54-201ENST00000339859 ASXL1Q8IXJ9 1541 aa12.51□□□□□ -0.41
USP54-201ENST00000339859 COL17A1Q9UMD9 1497 aaPredicted RBP12.51□□□□□ -0.41
USP54-201ENST00000339859 ERC2O15083 957 aa12.51□□□□□ -0.41
USP54-201ENST00000339859 SLC4A2P04920 1241 aa12.51□□□□□ -0.41
USP54-201ENST00000339859 DDB1Q16531 1140 aa12.51□□□□□ -0.41
USP54-201ENST00000339859 CTDP1Q9Y5B0 961 aaPredicted RBP12.51□□□□□ -0.41
USP54-201ENST00000339859 RILPL2Q969X0 211 aa12.5□□□□□ -0.41
USP54-201ENST00000339859 GNL3LQ9NVN8 582 aaKnown RBP12.5□□□□□ -0.41
USP54-201ENST00000339859 LTKP29376 864 aa12.5□□□□□ -0.41
USP54-201ENST00000339859 CENPQQ7L2Z9 268 aaPredicted RBP12.5□□□□□ -0.41
USP54-201ENST00000339859 TMPOP42166 694 aaKnown RBP12.5□□□□□ -0.41
USP54-201ENST00000339859 DIAPH3Q9NSV4 1193 aa12.5□□□□□ -0.41
USP54-201ENST00000339859 SMARCC1Q92922 1105 aaPredicted RBP12.5□□□□□ -0.41
USP54-201ENST00000339859 CNNM1Q9NRU3 951 aa12.5□□□□□ -0.41
USP54-201ENST00000339859 FMNL2Q96PY5 1086 aa12.5□□□□□ -0.41
USP54-201ENST00000339859 IFT57Q9NWB7 429 aa12.5□□□□□ -0.41
USP54-201ENST00000339859 PIK3C2GO75747 1445 aa12.49□□□□□ -0.41
USP54-201ENST00000339859 IL2RBP14784 551 aa12.49□□□□□ -0.41
USP54-201ENST00000339859 HSP90AB3PQ58FF7 597 aa12.49□□□□□ -0.41
USP54-201ENST00000339859 ERC1Q8IUD2 1116 aa12.49□□□□□ -0.41
USP54-201ENST00000339859 CHMP4CQ96CF2 233 aa12.49□□□□□ -0.41
USP54-201ENST00000339859 BCL11BQ9C0K0 894 aaPredicted RBP12.49□□□□□ -0.41
USP54-201ENST00000339859 CFAP65Q6ZU64 1925 aaKnown RBP12.49□□□□□ -0.41
USP54-201ENST00000339859 TULP1O00294 542 aaPredicted RBP12.48□□□□□ -0.41
USP54-201ENST00000339859 NEUROD6Q96NK8 337 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 CRBNQ96SW2 442 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 ZFYVE9O95405 1425 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 PLIN1O60240 522 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.48□□□□□ -0.41
USP54-201ENST00000339859 FLT4P35916 1363 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 BICDL1Q6ZP65 573 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 SRCIN1Q9C0H9 1055 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 CABLES1Q8TDN4 633 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 ZNF428Q96B54 188 aa12.48□□□□□ -0.41
USP54-201ENST00000339859 PTCD1O75127 700 aaKnown RBP12.47□□□□□ -0.41
USP54-201ENST00000339859 A2ML1A8K2U0 1454 aa12.47□□□□□ -0.41
USP54-201ENST00000339859 GOLGA6L4A6NEF3 574 aa12.47□□□□□ -0.41
USP54-201ENST00000339859 GCP02774 474 aa12.46□□□□□ -0.41
USP54-201ENST00000339859 MCM10Q7L590 875 aa12.46□□□□□ -0.41
USP54-201ENST00000339859 TSR2Q969E8 191 aaKnown RBP12.46□□□□□ -0.41
USP54-201ENST00000339859 TMEM94Q12767 1356 aa12.46□□□□□ -0.41
USP54-201ENST00000339859 GNAI2P04899 355 aa12.46□□□□□ -0.41
USP54-201ENST00000339859 EDC4Q6P2E9 1401 aaKnown RBP12.46□□□□□ -0.41
USP54-201ENST00000339859 NBPF14Q5TI25 921 aa12.46□□□□□ -0.41
USP54-201ENST00000339859 BTG4Q9NY30 223 aa12.46□□□□□ -0.41
USP54-201ENST00000339859 PIK3R4Q99570 1358 aa12.46□□□□□ -0.41
USP54-201ENST00000339859 TBC1D2BQ9UPU7 963 aa12.46□□□□□ -0.42
USP54-201ENST00000339859 FYB1O15117 783 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 MPHOSPH8Q99549 860 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 CDC42BPBQ9Y5S2 1711 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 CCDC57Q2TAC2 916 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 SYNE3Q6ZMZ3 975 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 ARHGAP31Q2M1Z3 1444 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 APPP05067 770 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 DIP2BQ9P265 1576 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 CCDC27Q2M243 656 aa12.45□□□□□ -0.42
USP54-201ENST00000339859 IGHMBP2P38935 993 aaKnown RBP12.44□□□□□ -0.42
USP54-201ENST00000339859 MFAP1P55081 439 aaKnown RBP12.44□□□□□ -0.42
USP54-201ENST00000339859 CWC22Q9HCG8 908 aaKnown RBP12.44□□□□□ -0.42
USP54-201ENST00000339859 PCDH11XQ9BZA7 1347 aa12.44□□□□□ -0.42
USP54-201ENST00000339859 PCDH11YQ9BZA8 1340 aa12.44□□□□□ -0.42
USP54-201ENST00000339859 CROCC2H7BZ55 1655 aa12.44□□□□□ -0.42
USP54-201ENST00000339859 HTATSF1O43719 755 aaKnown RBP12.44□□□□□ -0.42
USP54-201ENST00000339859 ORAI2Q96SN7 254 aa12.44□□□□□ -0.42
USP54-201ENST00000339859 NOB1Q9ULX3 412 aaKnown RBP12.44□□□□□ -0.42
USP54-201ENST00000339859 IQGAP3Q86VI3 1631 aa12.44□□□□□ -0.42
USP54-201ENST00000339859 TTC39AQ5SRH9 613 aa12.44□□□□□ -0.42
USP54-201ENST00000339859 MYOM2P54296 1465 aa12.44□□□□□ -0.42
USP54-201ENST00000339859 CCDC158Q5M9N0 1113 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 DUSP27Q5VZP5 1158 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 C11orf95C9JLR9 678 aaPredicted RBP12.43□□□□□ -0.42
USP54-201ENST00000339859 IP6K1Q92551 441 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 USP21Q9UK80 565 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 KIF3AQ9Y496 699 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 A0A1W2PP64 1363 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 RFC4P35249 363 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 HYPKQ9NX55 129 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 TPRNQ4KMQ1 711 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 AKAP4Q5JQC9 854 aa12.43□□□□□ -0.42
USP54-201ENST00000339859 LARP1Q6PKG0 1096 aaKnown RBP12.43□□□□□ -0.42
USP54-201ENST00000339859 ANO8Q9HCE9 1232 aaPredicted RBP12.43□□□□□ -0.42
USP54-201ENST00000339859 ARHGEF40Q8TER5 1519 aa12.42□□□□□ -0.42
USP54-201ENST00000339859 CLASRPQ8N2M8 674 aaKnown RBP12.42□□□□□ -0.42
USP54-201ENST00000339859 CLTCQ00610 1675 aaKnown RBP12.41□□□□□ -0.42
USP54-201ENST00000339859 AKAP17AQ02040 695 aaKnown RBP12.41□□□□□ -0.42
USP54-201ENST00000339859 ACSBG1Q96GR2 724 aa12.41□□□□□ -0.42
USP54-201ENST00000339859 HOXC9P31274 260 aa12.41□□□□□ -0.42
USP54-201ENST00000339859 TRDNQ13061 729 aa12.41□□□□□ -0.42
USP54-201ENST00000339859 RPGRQ92834 1020 aaKnown RBP12.41□□□□□ -0.42
USP54-201ENST00000339859 ST5P78524 1137 aa12.41□□□□□ -0.42
USP54-201ENST00000339859 EXOC6Q8TAG9 804 aa12.41□□□□□ -0.42
USP54-201ENST00000339859 RAD21O60216 631 aa12.4□□□□□ -0.42
USP54-201ENST00000339859 SURF6O75683 361 aaKnown RBP12.4□□□□□ -0.42
USP54-201ENST00000339859 ATP6V1AP38606 617 aa12.4□□□□□ -0.42
USP54-201ENST00000339859 ERICH2A1L162 156 aa12.4□□□□□ -0.42
USP54-201ENST00000339859 SNRPA1P09661 255 aaKnown RBP12.4□□□□□ -0.42
USP54-201ENST00000339859 RNF20Q5VTR2 975 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms