RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 MSH6P52701 1360 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 IQSEC2Q5JU85 1478 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 DCCP43146 1447 aa5.48□□□□□ -1.53
MCF2-201ENST00000338585 IL13P35225 146 aa5.47□□□□□ -1.53
MCF2-201ENST00000338585 HSP90AB2PQ58FF8 381 aa5.47□□□□□ -1.53
MCF2-201ENST00000338585 HMOX1P09601 288 aa5.47□□□□□ -1.53
MCF2-201ENST00000338585 IRX6P78412 446 aaPredicted RBP5.47□□□□□ -1.53
MCF2-201ENST00000338585 KRT28Q7Z3Y7 464 aa5.47□□□□□ -1.53
MCF2-201ENST00000338585 CADPS2Q86UW7 1296 aa5.47□□□□□ -1.53
MCF2-201ENST00000338585 PLEKHF1Q96S99 279 aa5.47□□□□□ -1.53
MCF2-201ENST00000338585 EIF4A2Q14240 407 aaKnown RBP5.47□□□□□ -1.53
MCF2-201ENST00000338585 LMOD2Q6P5Q4 547 aa5.47□□□□□ -1.53
MCF2-201ENST00000338585 KIF1AQ12756 1690 aa5.46□□□□□ -1.53
MCF2-201ENST00000338585 PRKAR2BP31323 418 aa5.46□□□□□ -1.54
MCF2-201ENST00000338585 EVX2Q03828 476 aa5.46□□□□□ -1.54
MCF2-201ENST00000338585 PDE3BQ13370 1112 aa5.46□□□□□ -1.54
MCF2-201ENST00000338585 FKBP8Q14318 412 aa5.46□□□□□ -1.54
MCF2-201ENST00000338585 RSPH6AQ9H0K4 717 aa5.46□□□□□ -1.54
MCF2-201ENST00000338585 TRPM3Q9HCF6 1732 aaPredicted RBP5.46□□□□□ -1.54
MCF2-201ENST00000338585 USP54Q70EL1 1684 aa5.46□□□□□ -1.54
MCF2-201ENST00000338585 WWC1Q8IX03 1113 aa5.46□□□□□ -1.54
MCF2-201ENST00000338585 RTN4Q9NQC3 1192 aaKnown RBP5.46□□□□□ -1.54
MCF2-201ENST00000338585 AMPHP49418 695 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 GOLGA2Q08379 1002 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 BRINP3Q76B58 766 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 AEBP1Q8IUX7 1158 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 PHACTR3Q96KR7 559 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 SBNO1A3KN83 1393 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 FLT4P35916 1363 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 NFAT5O94916 1531 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 ZBTB7CA1YPR0 619 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 POTEMA6NI47 508 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 GABBR2O75899 941 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 FCHSD2O94868 740 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 TMPOP42166 694 aaKnown RBP5.45□□□□□ -1.54
MCF2-201ENST00000338585 DUSP27Q5VZP5 1158 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 SLAIN2Q9P270 581 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 MAPK8IP3Q9UPT6 1336 aa5.45□□□□□ -1.54
MCF2-201ENST00000338585 HOXC9P31274 260 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 SLFN5Q08AF3 891 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 REM2Q8IYK8 340 aaPredicted RBP5.44□□□□□ -1.54
MCF2-201ENST00000338585 GCP02774 474 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 NEFLP07196 543 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 SULT6B1Q6IMI4 303 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 LTV1Q96GA3 475 aaPredicted RBP5.44□□□□□ -1.54
MCF2-201ENST00000338585 TRIM35Q9UPQ4 493 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 PXDNQ92626 1479 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 ALS2Q96Q42 1657 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 NPHP3Q7Z494 1330 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 LTN1O94822 1766 aa5.44□□□□□ -1.54
MCF2-201ENST00000338585 RGPD1P0DJD0 1748 aa5.43□□□□□ -1.54
MCF2-201ENST00000338585 TRMT2AQ8IZ69 625 aaKnown RBP5.43□□□□□ -1.54
MCF2-201ENST00000338585 NGEFQ8N5V2 710 aa5.43□□□□□ -1.54
MCF2-201ENST00000338585 RCAN3Q9UKA8 241 aa5.43□□□□□ -1.54
MCF2-201ENST00000338585 SLIT3O75094 1523 aa5.43□□□□□ -1.54
MCF2-201ENST00000338585 USP19O94966 1318 aa5.43□□□□□ -1.54
MCF2-201ENST00000338585 MED1Q15648 1581 aaPredicted RBP5.43□□□□□ -1.54
MCF2-201ENST00000338585 RIPK4P57078 832 aa5.43□□□□□ -1.54
MCF2-201ENST00000338585 CCDC27Q2M243 656 aa5.43□□□□□ -1.54
MCF2-201ENST00000338585 CABLES1Q8TDN4 633 aa5.43□□□□□ -1.54
MCF2-201ENST00000338585 E9PSI1 815 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 KCNH5Q8NCM2 988 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 EYA1Q99502 592 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 RNF123Q5XPI4 1314 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 TNS3Q68CZ2 1445 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 LTBP4Q8N2S1 1624 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 ZC3H6P61129 1189 aaKnown RBP5.42□□□□□ -1.54
MCF2-201ENST00000338585 NFE2L2Q16236 605 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 ARHGEF25Q86VW2 580 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 IP6K1Q92551 441 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 THUMPD2Q9BTF0 503 aaKnown RBP5.42□□□□□ -1.54
MCF2-201ENST00000338585 PNNQ9H307 717 aaKnown RBP5.42□□□□□ -1.54
MCF2-201ENST00000338585 SPATA31A3Q5VYP0 1347 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 IGSF1Q8N6C5 1336 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 WDR63Q8IWG1 891 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 USHBP1Q8N6Y0 703 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 RTL1A6NKG5 1358 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 ARHGEF10O15013 1369 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 KIF24Q5T7B8 1368 aa5.42□□□□□ -1.54
MCF2-201ENST00000338585 FAM83GA6ND36 823 aa5.41□□□□□ -1.54
MCF2-201ENST00000338585 PLIN1O60240 522 aa5.41□□□□□ -1.54
MCF2-201ENST00000338585 NEFMP07197 916 aa5.41□□□□□ -1.54
MCF2-201ENST00000338585 TSR2Q969E8 191 aaKnown RBP5.41□□□□□ -1.54
MCF2-201ENST00000338585 AXIN2Q9Y2T1 843 aa5.41□□□□□ -1.54
MCF2-201ENST00000338585 KDRP35968 1356 aa5.41□□□□□ -1.54
MCF2-201ENST00000338585 SOS2Q07890 1332 aaPredicted RBP5.41□□□□□ -1.54
MCF2-201ENST00000338585 RRP1P56182 461 aaKnown RBP5.41□□□□□ -1.54
MCF2-201ENST00000338585 DCTN1Q14203 1278 aa5.41□□□□□ -1.54
MCF2-201ENST00000338585 LRRC59Q96AG4 307 aaKnown RBP5.41□□□□□ -1.54
MCF2-201ENST00000338585 PHRF1Q9P1Y6 1649 aaKnown RBP5.4□□□□□ -1.54
MCF2-201ENST00000338585 NBPF6Q5VWK0 638 aa5.4□□□□□ -1.54
MCF2-201ENST00000338585 POTEGQ6S5H5 508 aa5.4□□□□□ -1.54
MCF2-201ENST00000338585 NBPF4Q96M43 638 aa5.4□□□□□ -1.54
MCF2-201ENST00000338585 DLG5Q8TDM6 1919 aa5.4□□□□□ -1.54
MCF2-201ENST00000338585 FANCIQ9NVI1 1328 aa5.4□□□□□ -1.55
MCF2-201ENST00000338585 CHRNA2Q15822 529 aa5.4□□□□□ -1.55
MCF2-201ENST00000338585 RGPD2P0DJD1 1756 aa5.4□□□□□ -1.55
MCF2-201ENST00000338585 CRYBG1Q9Y4K1 1723 aa5.4□□□□□ -1.55
MCF2-201ENST00000338585 RGPD5Q99666 1765 aa5.39□□□□□ -1.55
MCF2-201ENST00000338585 MTHFSDQ2M296 383 aaKnown RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms