RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PLEKHF1Q96S99 279 aa16.56■□□□□ 0.24
CCDC88C-201ENST00000331194 DUOX2Q9NRD8 1548 aa16.55■□□□□ 0.24
CCDC88C-201ENST00000331194 UGGT1Q9NYU2 1555 aa16.55■□□□□ 0.24
CCDC88C-201ENST00000331194 CBX1P83916 185 aa16.55■□□□□ 0.24
CCDC88C-201ENST00000331194 DNTTIP2Q5QJE6 756 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-201ENST00000331194 NOS1P29475 1434 aa16.55■□□□□ 0.24
CCDC88C-201ENST00000331194 IPO8O15397 1037 aaKnown RBP16.54■□□□□ 0.24
CCDC88C-201ENST00000331194 PTMAP06454 111 aaKnown RBP16.54■□□□□ 0.24
CCDC88C-201ENST00000331194 NUCB2P80303 420 aa16.54■□□□□ 0.24
CCDC88C-201ENST00000331194 CDC45O75419 566 aa16.54■□□□□ 0.24
CCDC88C-201ENST00000331194 CT47B1P0C2W7 299 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-201ENST00000331194 LRSAM1Q6UWE0 723 aa16.54■□□□□ 0.24
CCDC88C-201ENST00000331194 APBB1O00213 710 aa16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 SAFB2Q14151 953 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 CSPP1Q1MSJ5 1256 aa16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 OTUD7AQ8TE49 926 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 THUMPD2Q9BTF0 503 aaKnown RBP16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 ZSCAN20P17040 1043 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 GGNBP2Q9H3C7 697 aa16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 ZFYVE16Q7Z3T8 1539 aa16.53■□□□□ 0.24
CCDC88C-201ENST00000331194 ZNF710Q8N1W2 664 aa16.52■□□□□ 0.24
CCDC88C-201ENST00000331194 CCDC94Q9BW85 323 aaPredicted RBP16.52■□□□□ 0.24
CCDC88C-201ENST00000331194 CCDC39Q9UFE4 941 aa16.52■□□□□ 0.24
CCDC88C-201ENST00000331194 RABEP1Q15276 862 aa16.52■□□□□ 0.23
CCDC88C-201ENST00000331194 USP26Q9BXU7 913 aa16.52■□□□□ 0.23
CCDC88C-201ENST00000331194 ATP7AQ04656 1500 aa16.51■□□□□ 0.23
CCDC88C-201ENST00000331194 TSPYL6Q8N831 410 aa16.51■□□□□ 0.23
CCDC88C-201ENST00000331194 GCC1Q96CN9 775 aa16.51■□□□□ 0.23
CCDC88C-201ENST00000331194 CFAP74Q9C0B2 1584 aa16.51■□□□□ 0.23
CCDC88C-201ENST00000331194 TRPM2O94759 1503 aa16.5■□□□□ 0.23
CCDC88C-201ENST00000331194 PLEKHM2Q8IWE5 1019 aa16.5■□□□□ 0.23
CCDC88C-201ENST00000331194 CABP2Q9NPB3 220 aa16.5■□□□□ 0.23
CCDC88C-201ENST00000331194 IGSF3O75054 1194 aa16.5■□□□□ 0.23
CCDC88C-201ENST00000331194 ABCA9Q8IUA7 1624 aa16.49■□□□□ 0.23
CCDC88C-201ENST00000331194 FBLN1P23142 703 aa16.49■□□□□ 0.23
CCDC88C-201ENST00000331194 DMTNQ08495 405 aa16.49■□□□□ 0.23
CCDC88C-201ENST00000331194 STAC3Q96MF2 364 aa16.49■□□□□ 0.23
CCDC88C-201ENST00000331194 GDPD2Q9HCC8 539 aa16.49■□□□□ 0.23
CCDC88C-201ENST00000331194 ABCA6Q8N139 1617 aa16.49■□□□□ 0.23
CCDC88C-201ENST00000331194 NOL8Q76FK4 1167 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-201ENST00000331194 CHMP4BQ9H444 224 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-201ENST00000331194 ATP2B3Q16720 1220 aa16.48■□□□□ 0.23
CCDC88C-201ENST00000331194 SPDYE4A6NLX3 237 aa16.48■□□□□ 0.23
CCDC88C-201ENST00000331194 MTERF4Q7Z6M4 381 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-201ENST00000331194 TTC12Q9H892 705 aaPredicted RBP16.48■□□□□ 0.23
CCDC88C-201ENST00000331194 YEATS2Q9ULM3 1422 aa16.47■□□□□ 0.23
CCDC88C-201ENST00000331194 TSPOAP1O95153 1857 aa16.47■□□□□ 0.23
CCDC88C-201ENST00000331194 SMARCA5O60264 1052 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-201ENST00000331194 KIAA2012Q0VF49 1180 aa16.47■□□□□ 0.23
CCDC88C-201ENST00000331194 ABCC11Q96J66 1382 aa16.46■□□□□ 0.23
CCDC88C-201ENST00000331194 MCM5P33992 734 aa16.46■□□□□ 0.23
CCDC88C-201ENST00000331194 MYRIPQ8NFW9 859 aa16.46■□□□□ 0.23
CCDC88C-201ENST00000331194 FBXO31Q5XUX0 539 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-201ENST00000331194 RIMBP3CA6NJZ7 1639 aa16.46■□□□□ 0.23
CCDC88C-201ENST00000331194 RIMBP3BA6NNM3 1639 aa16.46■□□□□ 0.23
CCDC88C-201ENST00000331194 RIMBP3Q9UFD9 1639 aa16.46■□□□□ 0.23
CCDC88C-201ENST00000331194 ARHGAP31Q2M1Z3 1444 aa16.46■□□□□ 0.22
CCDC88C-201ENST00000331194 GTF2E1P29083 439 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-201ENST00000331194 PPP4R3BQ5MIZ7 849 aa16.45■□□□□ 0.22
CCDC88C-201ENST00000331194 NAP1L2Q9ULW6 460 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-201ENST00000331194 GADD45BO75293 160 aaPredicted RBP16.44■□□□□ 0.22
CCDC88C-201ENST00000331194 ADGRB2O60241 1585 aa16.44■□□□□ 0.22
CCDC88C-201ENST00000331194 TTC22Q5TAA0 569 aa16.44■□□□□ 0.22
CCDC88C-201ENST00000331194 MRPL50Q8N5N7 158 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-201ENST00000331194 VAMP4O75379 141 aa16.43■□□□□ 0.22
CCDC88C-201ENST00000331194 SDSP20132 328 aa16.43■□□□□ 0.22
CCDC88C-201ENST00000331194 ALDH1L2Q3SY69 923 aa16.43■□□□□ 0.22
CCDC88C-201ENST00000331194 USP25Q9UHP3 1055 aa16.43■□□□□ 0.22
CCDC88C-201ENST00000331194 MAP3K4Q9Y6R4 1608 aa16.43■□□□□ 0.22
CCDC88C-201ENST00000331194 TSPY26PQ9H489 355 aa16.43■□□□□ 0.22
CCDC88C-201ENST00000331194 CWC22Q9HCG8 908 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-201ENST00000331194 ST18O60284 1047 aa16.43■□□□□ 0.22
CCDC88C-201ENST00000331194 POGZQ7Z3K3 1410 aa16.42■□□□□ 0.22
CCDC88C-201ENST00000331194 NOLC1Q14978 699 aaKnown RBP eCLIP16.42■□□□□ 0.22
CCDC88C-201ENST00000331194 NEK4P51957 841 aa16.41■□□□□ 0.22
CCDC88C-201ENST00000331194 IL16Q14005 1332 aa16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 HMOX1P09601 288 aa16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 PLCB2Q00722 1185 aa16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 NCBP3Q53F19 620 aaKnown RBP16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 UTP14CQ5TAP6 766 aaKnown RBP16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 INTS3Q68E01 1043 aaKnown RBP16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 PHACTR3Q96KR7 559 aa16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 TRHP20396 242 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 TMX3Q96JJ7 454 aa16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 KIDINS220Q9ULH0 1771 aa16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 SBNO2Q9Y2G9 1366 aa16.4■□□□□ 0.22
CCDC88C-201ENST00000331194 KIAA1210Q9ULL0 1709 aa16.39■□□□□ 0.21
CCDC88C-201ENST00000331194 PRKAR2BP31323 418 aa16.39■□□□□ 0.21
CCDC88C-201ENST00000331194 MED14O60244 1454 aa16.39■□□□□ 0.21
CCDC88C-201ENST00000331194 DTNBO60941 627 aa16.39■□□□□ 0.21
CCDC88C-201ENST00000331194 BCL2L12Q9HB09 334 aa16.39■□□□□ 0.21
CCDC88C-201ENST00000331194 TSHZ3Q63HK5 1081 aa16.38■□□□□ 0.21
CCDC88C-201ENST00000331194 STK26Q9P289 416 aa16.38■□□□□ 0.21
CCDC88C-201ENST00000331194 DIAPH1O60610 1272 aaKnown RBP16.38■□□□□ 0.21
CCDC88C-201ENST00000331194 PIBF1Q8WXW3 757 aa16.38■□□□□ 0.21
CCDC88C-201ENST00000331194 ADCY5O95622 1261 aa16.37■□□□□ 0.21
CCDC88C-201ENST00000331194 C8orf58Q8NAV2 365 aa16.37■□□□□ 0.21
CCDC88C-201ENST00000331194 DCTPP1Q9H773 170 aa16.37■□□□□ 0.21
CCDC88C-201ENST00000331194 U2AF2P26368 475 aaKnown RBP eCLIP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms