RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 MLECQ14165 292 aa21.78■■□□□ 1.08
PTP4A3-201ENST00000329397 NFE2L2Q16236 605 aa21.78■■□□□ 1.08
PTP4A3-201ENST00000329397 SIRT2Q8IXJ6 389 aa21.78■■□□□ 1.08
PTP4A3-201ENST00000329397 MRPL50Q8N5N7 158 aaKnown RBP21.78■■□□□ 1.08
PTP4A3-201ENST00000329397 ZNF692Q9BU19 519 aaPredicted RBP21.78■■□□□ 1.08
PTP4A3-201ENST00000329397 NEO1Q92859 1461 aa21.77■■□□□ 1.08
PTP4A3-201ENST00000329397 RICTORQ6R327 1708 aa21.77■■□□□ 1.08
PTP4A3-201ENST00000329397 FAM43AQ8N2R8 423 aa21.77■■□□□ 1.08
PTP4A3-201ENST00000329397 MED14O60244 1454 aa21.77■■□□□ 1.08
PTP4A3-201ENST00000329397 PDIA4P13667 645 aaKnown RBP21.76■■□□□ 1.07
PTP4A3-201ENST00000329397 PNNQ9H307 717 aaKnown RBP21.76■■□□□ 1.07
PTP4A3-201ENST00000329397 GOLGA6L3A6NEY3 463 aa21.76■■□□□ 1.07
PTP4A3-201ENST00000329397 C8orf58Q8NAV2 365 aa21.76■■□□□ 1.07
PTP4A3-201ENST00000329397 CLTCQ00610 1675 aaKnown RBP21.76■■□□□ 1.07
PTP4A3-201ENST00000329397 L1TD1Q5T7N2 865 aaKnown RBP21.75■■□□□ 1.07
PTP4A3-201ENST00000329397 A0A0U1RQG5 324 aaPredicted RBP21.74■■□□□ 1.07
PTP4A3-201ENST00000329397 HSP90AB1P08238 724 aaKnown RBP21.74■■□□□ 1.07
PTP4A3-201ENST00000329397 KRT24Q2M2I5 525 aa21.74■■□□□ 1.07
PTP4A3-201ENST00000329397 RBM25P49756 843 aaKnown RBP21.73■■□□□ 1.07
PTP4A3-201ENST00000329397 TWISTNBQ3B726 338 aaPredicted RBP21.73■■□□□ 1.07
PTP4A3-201ENST00000329397 KIF2CQ99661 725 aa21.73■■□□□ 1.07
PTP4A3-201ENST00000329397 TBC1D9Q6ZT07 1266 aa21.73■■□□□ 1.07
PTP4A3-201ENST00000329397 IL13P35225 146 aa21.72■■□□□ 1.07
PTP4A3-201ENST00000329397 BMP2KLQ5H9B9 411 aa21.71■■□□□ 1.07
PTP4A3-201ENST00000329397 TXNDC2Q86VQ3 553 aa21.71■■□□□ 1.07
PTP4A3-201ENST00000329397 TNPO1Q92973 898 aaKnown RBP21.71■■□□□ 1.07
PTP4A3-201ENST00000329397 FSD2A1L4K1 749 aa21.7■■□□□ 1.06
PTP4A3-201ENST00000329397 HSP90AA1P07900 732 aaKnown RBP21.7■■□□□ 1.06
PTP4A3-201ENST00000329397 APBB1O00213 710 aa21.7■■□□□ 1.06
PTP4A3-201ENST00000329397 GNAI1P63096 354 aa21.69■■□□□ 1.06
PTP4A3-201ENST00000329397 ZMYND15Q9H091 742 aa21.69■■□□□ 1.06
PTP4A3-201ENST00000329397 AEBP1Q8IUX7 1158 aa21.69■■□□□ 1.06
PTP4A3-201ENST00000329397 NUTM2FA1L443 756 aa21.68■■□□□ 1.06
PTP4A3-201ENST00000329397 C16orf71Q8IYS4 520 aaPredicted RBP21.68■■□□□ 1.06
PTP4A3-201ENST00000329397 IFT57Q9NWB7 429 aa21.68■■□□□ 1.06
PTP4A3-201ENST00000329397 DLG5Q8TDM6 1919 aa21.67■■□□□ 1.06
PTP4A3-201ENST00000329397 DDIT3P35638 169 aa21.67■■□□□ 1.06
PTP4A3-201ENST00000329397 SOX12O15370 315 aa21.67■■□□□ 1.06
PTP4A3-201ENST00000329397 GCC1Q96CN9 775 aa21.67■■□□□ 1.06
PTP4A3-201ENST00000329397 AK9Q5TCS8 1911 aa21.67■■□□□ 1.06
PTP4A3-201ENST00000329397 CDC42BPGQ6DT37 1551 aa21.67■■□□□ 1.06
PTP4A3-201ENST00000329397 PTCH1Q13635 1447 aa21.66■■□□□ 1.06
PTP4A3-201ENST00000329397 ABCC4O15439 1325 aa21.66■■□□□ 1.06
PTP4A3-201ENST00000329397 NCOA3Q9Y6Q9 1424 aa21.66■■□□□ 1.06
PTP4A3-201ENST00000329397 ZNF853P0CG23 659 aa21.65■■□□□ 1.06
PTP4A3-201ENST00000329397 GSPT1P15170 499 aaKnown RBP21.65■■□□□ 1.06
PTP4A3-201ENST00000329397 OTUD7AQ8TE49 926 aaPredicted RBP21.65■■□□□ 1.06
PTP4A3-201ENST00000329397 FGD1P98174 961 aa21.65■■□□□ 1.06
PTP4A3-201ENST00000329397 WASLO00401 505 aaPredicted RBP21.64■■□□□ 1.05
PTP4A3-201ENST00000329397 BRPF1P55201 1214 aaPredicted RBP21.64■■□□□ 1.05
PTP4A3-201ENST00000329397 SNX21Q969T3 373 aa21.64■■□□□ 1.05
PTP4A3-201ENST00000329397 GAS2L2Q8NHY3 880 aa21.63■■□□□ 1.05
PTP4A3-201ENST00000329397 NUDT16Q96DE0 195 aaKnown RBP21.63■■□□□ 1.05
PTP4A3-201ENST00000329397 COG3Q96JB2 828 aa21.63■■□□□ 1.05
PTP4A3-201ENST00000329397 CFAP44Q96MT7 982 aa21.63■■□□□ 1.05
PTP4A3-201ENST00000329397 CPS1P31327 1500 aa21.63■■□□□ 1.05
PTP4A3-201ENST00000329397 DDX11L8A8MPP1 907 aa21.63■■□□□ 1.05
PTP4A3-201ENST00000329397 METP08581 1390 aa21.63■■□□□ 1.05
PTP4A3-201ENST00000329397 ATP7BP35670 1465 aa21.63■■□□□ 1.05
PTP4A3-201ENST00000329397 RIMS2Q9UQ26 1411 aa21.62■■□□□ 1.05
PTP4A3-201ENST00000329397 MCM10Q7L590 875 aa21.62■■□□□ 1.05
PTP4A3-201ENST00000329397 ARHGAP45Q92619 1136 aa21.62■■□□□ 1.05
PTP4A3-201ENST00000329397 ZNF428Q96B54 188 aa21.62■■□□□ 1.05
PTP4A3-201ENST00000329397 CALD1Q05682 793 aaKnown RBP21.62■■□□□ 1.05
PTP4A3-201ENST00000329397 PIK3R4Q99570 1358 aa21.62■■□□□ 1.05
PTP4A3-201ENST00000329397 KNDC1Q76NI1 1749 aa21.62■■□□□ 1.05
PTP4A3-201ENST00000329397 SMARCA5O60264 1052 aaPredicted RBP21.61■■□□□ 1.05
PTP4A3-201ENST00000329397 SSFA2P28290 1259 aa21.61■■□□□ 1.05
PTP4A3-201ENST00000329397 GAS2L3Q86XJ1 694 aa21.61■■□□□ 1.05
PTP4A3-201ENST00000329397 BCL11BQ9C0K0 894 aaPredicted RBP21.61■■□□□ 1.05
PTP4A3-201ENST00000329397 A2ML1A8K2U0 1454 aa21.61■■□□□ 1.05
PTP4A3-201ENST00000329397 SULT6B1Q6IMI4 303 aa21.6■■□□□ 1.05
PTP4A3-201ENST00000329397 FAM69CQ0P6D2 419 aa21.6■■□□□ 1.05
PTP4A3-201ENST00000329397 K7ELQ4 463 aaPredicted RBP21.59■■□□□ 1.05
PTP4A3-201ENST00000329397 PLEKHM2Q8IWE5 1019 aa21.59■■□□□ 1.05
PTP4A3-201ENST00000329397 GRPEL1Q9HAV7 217 aa21.59■■□□□ 1.05
PTP4A3-201ENST00000329397 EDC4Q6P2E9 1401 aaKnown RBP21.59■■□□□ 1.05
PTP4A3-201ENST00000329397 RAB3GAP1Q15042 981 aa21.59■■□□□ 1.05
PTP4A3-201ENST00000329397 MIS18AQ9NYP9 233 aa21.59■■□□□ 1.05
PTP4A3-201ENST00000329397 TSPOAP1O95153 1857 aa21.59■■□□□ 1.05
PTP4A3-201ENST00000329397 CPSF1Q10570 1443 aaKnown RBP21.59■■□□□ 1.05
PTP4A3-201ENST00000329397 CDC45O75419 566 aa21.58■■□□□ 1.05
PTP4A3-201ENST00000329397 RIMBP3CA6NJZ7 1639 aa21.58■■□□□ 1.05
PTP4A3-201ENST00000329397 RIMBP3BA6NNM3 1639 aa21.58■■□□□ 1.05
PTP4A3-201ENST00000329397 RIMBP3Q9UFD9 1639 aa21.58■■□□□ 1.05
PTP4A3-201ENST00000329397 API5Q9BZZ5 524 aaKnown RBP21.58■■□□□ 1.04
PTP4A3-201ENST00000329397 CDK12Q9NYV4 1490 aaPredicted RBP21.57■■□□□ 1.04
PTP4A3-201ENST00000329397 MRE11P49959 708 aa21.56■■□□□ 1.04
PTP4A3-201ENST00000329397 PRR36Q9H6K5 1346 aa21.55■■□□□ 1.04
PTP4A3-201ENST00000329397 GBP4Q96PP9 640 aa21.55■■□□□ 1.04
PTP4A3-201ENST00000329397 EIF4A2Q14240 407 aaKnown RBP21.55■■□□□ 1.04
PTP4A3-201ENST00000329397 CCDC61Q9Y6R9 512 aa21.55■■□□□ 1.04
PTP4A3-201ENST00000329397 CHMP4BQ9H444 224 aaKnown RBP21.54■■□□□ 1.04
PTP4A3-201ENST00000329397 SETD1AO15047 1707 aaKnown RBP21.54■■□□□ 1.04
PTP4A3-201ENST00000329397 LMOD3Q0VAK6 560 aa21.54■■□□□ 1.04
PTP4A3-201ENST00000329397 MEIS3Q99687 375 aa21.54■■□□□ 1.04
PTP4A3-201ENST00000329397 MSH6P52701 1360 aa21.53■■□□□ 1.04
PTP4A3-201ENST00000329397 HSP90AB2PQ58FF8 381 aa21.53■■□□□ 1.04
PTP4A3-201ENST00000329397 VSIG10Q8N0Z9 540 aa21.53■■□□□ 1.04
PTP4A3-201ENST00000329397 DCTPP1Q9H773 170 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms