RNA–Protein interactions for RNA: ENST00000308077.9

PTCD2-201, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 1 (best)

Gene PTCD2, Length 2,195 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-201ENST00000308077 MSH6P52701 1360 aa9.3□□□□□ -0.92
PTCD2-201ENST00000308077 PEAK1Q9H792 1746 aa9.29□□□□□ -0.92
PTCD2-201ENST00000308077 ATF3P18847 181 aa9.29□□□□□ -0.92
PTCD2-201ENST00000308077 CFAP53Q96M91 514 aa9.29□□□□□ -0.92
PTCD2-201ENST00000308077 EMILIN1Q9Y6C2 1016 aa9.29□□□□□ -0.92
PTCD2-201ENST00000308077 RRS1Q15050 365 aaKnown RBP9.28□□□□□ -0.92
PTCD2-201ENST00000308077 DNAJC5GQ8N7S2 189 aa9.28□□□□□ -0.92
PTCD2-201ENST00000308077 FOXO3O43524 673 aa9.27□□□□□ -0.92
PTCD2-201ENST00000308077 CADPS2Q86UW7 1296 aa9.27□□□□□ -0.92
PTCD2-201ENST00000308077 PAK3O75914 559 aaPredicted RBP9.27□□□□□ -0.93
PTCD2-201ENST00000308077 XPCQ01831 940 aaPredicted RBP9.27□□□□□ -0.93
PTCD2-201ENST00000308077 PSME1Q06323 249 aa9.27□□□□□ -0.93
PTCD2-201ENST00000308077 CCDC146Q8IYE0 955 aa9.27□□□□□ -0.93
PTCD2-201ENST00000308077 JMYQ8N9B5 988 aa9.27□□□□□ -0.93
PTCD2-201ENST00000308077 ALS2Q96Q42 1657 aa9.26□□□□□ -0.93
PTCD2-201ENST00000308077 APLP1P51693 650 aa9.26□□□□□ -0.93
PTCD2-201ENST00000308077 NLRP6P59044 892 aa9.26□□□□□ -0.93
PTCD2-201ENST00000308077 NUTM2GQ5VZR2 741 aa9.26□□□□□ -0.93
PTCD2-201ENST00000308077 PPM1GO15355 546 aaPredicted RBP9.26□□□□□ -0.93
PTCD2-201ENST00000308077 ABTB2Q8N961 1025 aa9.26□□□□□ -0.93
PTCD2-201ENST00000308077 SALL2Q9Y467 1007 aaPredicted RBP9.26□□□□□ -0.93
PTCD2-201ENST00000308077 CEP350Q5VT06 3117 aa9.26□□□□□ -0.93
PTCD2-201ENST00000308077 SOX12O15370 315 aa9.25□□□□□ -0.93
PTCD2-201ENST00000308077 SF3B2Q13435 895 aaKnown RBP9.25□□□□□ -0.93
PTCD2-201ENST00000308077 DEFB132Q7Z7B7 95 aa9.25□□□□□ -0.93
PTCD2-201ENST00000308077 MPNDQ8N594 471 aa9.25□□□□□ -0.93
PTCD2-201ENST00000308077 DDX17Q92841 729 aaKnown RBP9.25□□□□□ -0.93
PTCD2-201ENST00000308077 SHANK3Q9BYB0 1731 aa9.25□□□□□ -0.93
PTCD2-201ENST00000308077 DIAPH1O60610 1272 aaKnown RBP9.24□□□□□ -0.93
PTCD2-201ENST00000308077 KRT28Q7Z3Y7 464 aa9.24□□□□□ -0.93
PTCD2-201ENST00000308077 NFAT5O94916 1531 aa9.24□□□□□ -0.93
PTCD2-201ENST00000308077 LTN1O94822 1766 aa9.24□□□□□ -0.93
PTCD2-201ENST00000308077 MAP3K19Q56UN5 1328 aa9.24□□□□□ -0.93
PTCD2-201ENST00000308077 U2AF1L5P0DN76 240 aaPredicted RBP9.24□□□□□ -0.93
PTCD2-201ENST00000308077 U2AF1Q01081 240 aaKnown RBP eCLIP9.24□□□□□ -0.93
PTCD2-201ENST00000308077 PXDNQ92626 1479 aa9.24□□□□□ -0.93
PTCD2-201ENST00000308077 SLIT3O75094 1523 aa9.23□□□□□ -0.93
PTCD2-201ENST00000308077 APAF1O14727 1248 aa9.23□□□□□ -0.93
PTCD2-201ENST00000308077 U2SURPO15042 1029 aaKnown RBP9.23□□□□□ -0.93
PTCD2-201ENST00000308077 IL13P35225 146 aa9.23□□□□□ -0.93
PTCD2-201ENST00000308077 BRINP3Q76B58 766 aa9.23□□□□□ -0.93
PTCD2-201ENST00000308077 NUDCQ9Y266 331 aa9.23□□□□□ -0.93
PTCD2-201ENST00000308077 RGPD1P0DJD0 1748 aa9.23□□□□□ -0.93
PTCD2-201ENST00000308077 RUNDC1Q96C34 613 aa9.23□□□□□ -0.93
PTCD2-201ENST00000308077 MLLT1Q03111 559 aaPredicted RBP9.22□□□□□ -0.93
PTCD2-201ENST00000308077 PLEKHF1Q96S99 279 aa9.22□□□□□ -0.93
PTCD2-201ENST00000308077 SBNO1A3KN83 1393 aa9.22□□□□□ -0.93
PTCD2-201ENST00000308077 ZNF521Q96K83 1311 aa9.22□□□□□ -0.93
PTCD2-201ENST00000308077 CRYBG1Q9Y4K1 1723 aa9.22□□□□□ -0.93
PTCD2-201ENST00000308077 SLAIN2Q9P270 581 aa9.22□□□□□ -0.93
PTCD2-201ENST00000308077 FLT4P35916 1363 aa9.21□□□□□ -0.93
PTCD2-201ENST00000308077 PHRF1Q9P1Y6 1649 aaKnown RBP9.21□□□□□ -0.93
PTCD2-201ENST00000308077 USP19O94966 1318 aa9.21□□□□□ -0.93
PTCD2-201ENST00000308077 NPHP3Q7Z494 1330 aa9.21□□□□□ -0.93
PTCD2-201ENST00000308077 EIF4A2Q14240 407 aaKnown RBP9.21□□□□□ -0.94
PTCD2-201ENST00000308077 HSP90AB2PQ58FF8 381 aa9.21□□□□□ -0.94
PTCD2-201ENST00000308077 TNS3Q68CZ2 1445 aa9.2□□□□□ -0.94
PTCD2-201ENST00000308077 TCP11L2Q8N4U5 519 aa9.2□□□□□ -0.94
PTCD2-201ENST00000308077 CDCA7LQ96GN5 454 aa9.2□□□□□ -0.94
PTCD2-201ENST00000308077 LMOD2Q6P5Q4 547 aa9.2□□□□□ -0.94
PTCD2-201ENST00000308077 RSPH6AQ9H0K4 717 aa9.2□□□□□ -0.94
PTCD2-201ENST00000308077 PPP1R1BQ9UD71 204 aaPredicted RBP9.2□□□□□ -0.94
PTCD2-201ENST00000308077 KIF24Q5T7B8 1368 aa9.19□□□□□ -0.94
PTCD2-201ENST00000308077 RGS19P49795 217 aa9.19□□□□□ -0.94
PTCD2-201ENST00000308077 PDE3BQ13370 1112 aa9.19□□□□□ -0.94
PTCD2-201ENST00000308077 RRP7AQ9Y3A4 280 aaKnown RBP9.19□□□□□ -0.94
PTCD2-201ENST00000308077 RTL1A6NKG5 1358 aa9.19□□□□□ -0.94
PTCD2-201ENST00000308077 FCHSD2O94868 740 aa9.19□□□□□ -0.94
PTCD2-201ENST00000308077 HMOX1P09601 288 aa9.19□□□□□ -0.94
PTCD2-201ENST00000308077 HOXC9P31274 260 aa9.19□□□□□ -0.94
PTCD2-201ENST00000308077 AMPHP49418 695 aa9.19□□□□□ -0.94
PTCD2-201ENST00000308077 R3HDM1Q15032 1099 aaKnown RBP9.19□□□□□ -0.94
PTCD2-201ENST00000308077 SPATA31A3Q5VYP0 1347 aa9.18□□□□□ -0.94
PTCD2-201ENST00000308077 PLEKHG5O94827 1062 aa9.18□□□□□ -0.94
PTCD2-201ENST00000308077 GCP02774 474 aa9.18□□□□□ -0.94
PTCD2-201ENST00000308077 PRKAR2BP31323 418 aa9.18□□□□□ -0.94
PTCD2-201ENST00000308077 KCNH5Q8NCM2 988 aa9.18□□□□□ -0.94
PTCD2-201ENST00000308077 SOS2Q07890 1332 aaPredicted RBP9.18□□□□□ -0.94
PTCD2-201ENST00000308077 NEUROD2Q15784 382 aa9.17□□□□□ -0.94
PTCD2-201ENST00000308077 NGEFQ8N5V2 710 aa9.17□□□□□ -0.94
PTCD2-201ENST00000308077 RGPD5Q99666 1765 aa9.17□□□□□ -0.94
PTCD2-201ENST00000308077 DLG5Q8TDM6 1919 aa9.17□□□□□ -0.94
PTCD2-201ENST00000308077 FAM83GA6ND36 823 aa9.17□□□□□ -0.94
PTCD2-201ENST00000308077 AEBP1Q8IUX7 1158 aa9.17□□□□□ -0.94
PTCD2-201ENST00000308077 WWC1Q8IX03 1113 aa9.17□□□□□ -0.94
PTCD2-201ENST00000308077 SPINK5Q9NQ38 1064 aaPredicted RBP9.17□□□□□ -0.94
PTCD2-201ENST00000308077 RGPD2P0DJD1 1756 aa9.17□□□□□ -0.94
PTCD2-201ENST00000308077 ARHGEF10O15013 1369 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 ABCA3Q99758 1704 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 TMPOP42166 694 aaKnown RBP9.16□□□□□ -0.94
PTCD2-201ENST00000308077 ARHGEF25Q86VW2 580 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 IP6K1Q92551 441 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 PHACTR3Q96KR7 559 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 SUPT16HQ9Y5B9 1047 aaKnown RBP9.16□□□□□ -0.94
PTCD2-201ENST00000308077 AHDC1Q5TGY3 1603 aaPredicted RBP9.16□□□□□ -0.94
PTCD2-201ENST00000308077 MAPK8IP3Q9UPT6 1336 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 COL18A1P39060 1754 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 GOLGA2Q08379 1002 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 CCDC27Q2M243 656 aa9.16□□□□□ -0.94
PTCD2-201ENST00000308077 NCBP3Q53F19 620 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms