RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 MICALCLQ6ZW33 695 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 ERBINQ96RT1 1412 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 NBPF1Q3BBV0 1214 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 ZFYVE27Q5T4F4 411 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 EHBP1Q8NDI1 1231 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 PCF11O94913 1555 aaKnown RBP6.22□□□□□ -1.41
SCN1A-201ENST00000303395 ZSCAN12O43309 604 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 PARD3Q8TEW0 1356 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 EPS15P42566 896 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 BMP2KLQ5H9B9 411 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 ITPRIPQ8IWB1 547 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 PCMTD1Q96MG8 357 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-201ENST00000303395 ARHGAP31Q2M1Z3 1444 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 SPATS2Q86XZ4 545 aaKnown RBP6.22□□□□□ -1.41
SCN1A-201ENST00000303395 FMNL3Q8IVF7 1028 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 IQCDQ96DY2 449 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 PODXL2Q9NZ53 605 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 PTPRGP23470 1445 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 MAPKBP1O60336 1514 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 CFAP45Q9UL16 551 aa6.22□□□□□ -1.41
SCN1A-201ENST00000303395 MAP3K9P80192 1104 aa6.21□□□□□ -1.41
SCN1A-201ENST00000303395 ZNF771Q7L3S4 317 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-201ENST00000303395 SMARCE1Q969G3 411 aa6.21□□□□□ -1.41
SCN1A-201ENST00000303395 ANKRD36BQ8N2N9 1353 aa6.21□□□□□ -1.41
SCN1A-201ENST00000303395 K7ELQ4 463 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-201ENST00000303395 SF3A1Q15459 793 aaKnown RBP6.21□□□□□ -1.41
SCN1A-201ENST00000303395 P3H3Q8IVL6 736 aa6.21□□□□□ -1.41
SCN1A-201ENST00000303395 HDAC1Q13547 482 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 GTF2E1P29083 439 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 CCAR1Q8IX12 1150 aaKnown RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 FRAT1Q92837 279 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 UHRF1BP1LA0JNW5 1464 aa6.21□□□□□ -1.42
SCN1A-201ENST00000303395 SCAF11Q99590 1463 aaKnown RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 NT5C2P49902 561 aa6.21□□□□□ -1.42
SCN1A-201ENST00000303395 UTP14CQ5TAP6 766 aaKnown RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 LUZP1Q86V48 1076 aa6.21□□□□□ -1.42
SCN1A-201ENST00000303395 RTN4Q9NQC3 1192 aaKnown RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 CHMP3Q9Y3E7 222 aa6.21□□□□□ -1.42
SCN1A-201ENST00000303395 CCT4P50991 539 aaKnown RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 LMNB2Q03252 620 aa6.21□□□□□ -1.42
SCN1A-201ENST00000303395 SEPT7Q16181 437 aaKnown RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 INTS4Q96HW7 963 aaKnown RBP6.21□□□□□ -1.42
SCN1A-201ENST00000303395 CCDC175P0C221 793 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 KDM2AQ9Y2K7 1162 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 ZFYVE9O95405 1425 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 SMTNL1A8MU46 457 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 TRIM21P19474 475 aaKnown RBP6.2□□□□□ -1.42
SCN1A-201ENST00000303395 BMS1Q14692 1282 aaKnown RBP6.2□□□□□ -1.42
SCN1A-201ENST00000303395 ZNF330Q9Y3S2 320 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-201ENST00000303395 ABCC2Q92887 1545 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 POGKQ9P215 609 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 SSH2Q76I76 1423 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 ATP8B1O43520 1251 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 TOPBP1Q92547 1522 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 DDX19AQ9NUU7 478 aaKnown RBP6.2□□□□□ -1.42
SCN1A-201ENST00000303395 POLR3AO14802 1390 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-201ENST00000303395 FOXD1Q16676 465 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 CROCCP2Q86T23 111 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 CEP57L1Q8IYX8 460 aa6.2□□□□□ -1.42
SCN1A-201ENST00000303395 DDX23Q9BUQ8 820 aaKnown RBP6.2□□□□□ -1.42
SCN1A-201ENST00000303395 H0YHG0 523 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 CLASRPQ8N2M8 674 aaKnown RBP6.19□□□□□ -1.42
SCN1A-201ENST00000303395 PPM1EQ8WY54 764 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 CCDC9Q9Y3X0 531 aaKnown RBP6.19□□□□□ -1.42
SCN1A-201ENST00000303395 ELP1O95163 1332 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 PDE6BP35913 854 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 KIF3BO15066 747 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 CDKL5O76039 1030 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 CFAP57Q96MR6 1250 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 AOX1Q06278 1338 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 DNMT1P26358 1616 aaKnown RBP6.19□□□□□ -1.42
SCN1A-201ENST00000303395 ADGBQ8N7X0 1667 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 PPFIA3O75145 1194 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 OFD1O75665 1012 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 DESP17661 470 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 NEUROD2Q15784 382 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 TTLL5Q6EMB2 1281 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 SENP3Q9H4L4 574 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-201ENST00000303395 BLMP54132 1417 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-201ENST00000303395 MRC2Q9UBG0 1479 aa6.19□□□□□ -1.42
SCN1A-201ENST00000303395 HMGB3O15347 200 aaKnown RBP6.19□□□□□ -1.42
SCN1A-201ENST00000303395 U2AF1L5P0DN76 240 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-201ENST00000303395 KRT85P78386 507 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 U2AF1Q01081 240 aaKnown RBP eCLIP6.18□□□□□ -1.42
SCN1A-201ENST00000303395 CCDC150Q8NCX0 1101 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 ASXL1Q8IXJ9 1541 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 TMEM132AQ24JP5 1023 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 PLCD4Q9BRC7 762 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 NAP1L1P55209 391 aaKnown RBP6.18□□□□□ -1.42
SCN1A-201ENST00000303395 SPATA24Q86W54 205 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 MVPQ14764 893 aaKnown RBP6.18□□□□□ -1.42
SCN1A-201ENST00000303395 SMC5Q8IY18 1101 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 PHAXQ9H814 394 aaKnown RBP6.18□□□□□ -1.42
SCN1A-201ENST00000303395 NF2P35240 595 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 KIF18AQ8NI77 898 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 TOMM22Q9NS69 142 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 DUOX2Q9NRD8 1548 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 RAD50Q92878 1312 aa6.18□□□□□ -1.42
SCN1A-201ENST00000303395 DDX58O95786 925 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms