RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 HMOX1P09601 288 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 CCDC113Q9H0I3 377 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 CFAP45Q9UL16 551 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 CCDC144AA2RUR9 1427 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 GRIPAP1Q4V328 841 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 RSPH4AQ5TD94 716 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 KIAA1328Q86T90 577 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 PKNOX2Q96KN3 472 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 GNAI3P08754 354 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 NUP133Q8WUM0 1156 aa12.24□□□□□ -0.45
CLIP1-201ENST00000302528 STK3Q13188 491 aa12.23□□□□□ -0.45
CLIP1-201ENST00000302528 ERICH4A6NGS2 130 aa12.23□□□□□ -0.45
CLIP1-201ENST00000302528 EIF5P55010 431 aaKnown RBP12.23□□□□□ -0.45
CLIP1-201ENST00000302528 ERICH3Q5RHP9 1530 aa12.23□□□□□ -0.45
CLIP1-201ENST00000302528 ZNF76P36508 570 aa12.23□□□□□ -0.45
CLIP1-201ENST00000302528 RBM5P52756 815 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLIP1-201ENST00000302528 DNAI2Q9GZS0 605 aa12.23□□□□□ -0.45
CLIP1-201ENST00000302528 SHTN1A0MZ66 631 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 AEBP1Q8IUX7 1158 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 ARAP1Q96P48 1450 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 EPB41L2O43491 1005 aaKnown RBP12.22□□□□□ -0.45
CLIP1-201ENST00000302528 RBM42Q9BTD8 480 aaKnown RBP12.22□□□□□ -0.45
CLIP1-201ENST00000302528 AAMPQ13685 434 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 ATF3P18847 181 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 MPNDQ8N594 471 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 CCDC148Q8NFR7 591 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 CRACR2AQ9BSW2 395 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 CYP46A1Q9Y6A2 500 aa12.22□□□□□ -0.45
CLIP1-201ENST00000302528 CADPSQ9ULU8 1353 aa12.21□□□□□ -0.45
CLIP1-201ENST00000302528 TICAM2Q86XR7 235 aa12.21□□□□□ -0.45
CLIP1-201ENST00000302528 ANKRD1Q15327 319 aa12.21□□□□□ -0.45
CLIP1-201ENST00000302528 ARHGAP29Q52LW3 1261 aa12.21□□□□□ -0.45
CLIP1-201ENST00000302528 PANK1Q8TE04 598 aa12.21□□□□□ -0.45
CLIP1-201ENST00000302528 PRKRIP1Q9H875 184 aaPredicted RBP12.21□□□□□ -0.46
CLIP1-201ENST00000302528 CCDC30Q5VVM6 783 aa12.21□□□□□ -0.46
CLIP1-201ENST00000302528 TMCO3Q6UWJ1 677 aa12.21□□□□□ -0.46
CLIP1-201ENST00000302528 CCDC18Q5T9S5 1454 aa12.2□□□□□ -0.46
CLIP1-201ENST00000302528 MAPK8IP2Q13387 824 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-201ENST00000302528 COMMD10Q9Y6G5 202 aa12.2□□□□□ -0.46
CLIP1-201ENST00000302528 IGF1RP08069 1367 aa12.2□□□□□ -0.46
CLIP1-201ENST00000302528 KRT85P78386 507 aa12.2□□□□□ -0.46
CLIP1-201ENST00000302528 GSTTP1A0A1W2PQM5 241 aa12.2□□□□□ -0.46
CLIP1-201ENST00000302528 SPATA24Q86W54 205 aa12.2□□□□□ -0.46
CLIP1-201ENST00000302528 PPP1R12BO60237 982 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-201ENST00000302528 ZSCAN29Q8IWY8 852 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-201ENST00000302528 DDX23Q9BUQ8 820 aaKnown RBP12.19□□□□□ -0.46
CLIP1-201ENST00000302528 UBE4AQ14139 1066 aa12.19□□□□□ -0.46
CLIP1-201ENST00000302528 CEP57L1Q8IYX8 460 aa12.19□□□□□ -0.46
CLIP1-201ENST00000302528 ZNF397Q8NF99 534 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-201ENST00000302528 SMC1AQ14683 1233 aaKnown RBP12.19□□□□□ -0.46
CLIP1-201ENST00000302528 GBP3Q9H0R5 595 aa12.19□□□□□ -0.46
CLIP1-201ENST00000302528 UQCRHLA0A096LP55 91 aa12.19□□□□□ -0.46
CLIP1-201ENST00000302528 UQCRHP07919 91 aa12.19□□□□□ -0.46
CLIP1-201ENST00000302528 UBXN4Q92575 508 aa12.19□□□□□ -0.46
CLIP1-201ENST00000302528 LRRC9Q6ZRR7 1453 aa12.18□□□□□ -0.46
CLIP1-201ENST00000302528 SCLT1Q96NL6 688 aa12.18□□□□□ -0.46
CLIP1-201ENST00000302528 CDKL5O76039 1030 aa12.18□□□□□ -0.46
CLIP1-201ENST00000302528 WDR33Q9C0J8 1336 aaKnown RBP12.18□□□□□ -0.46
CLIP1-201ENST00000302528 NUTM2GQ5VZR2 741 aa12.18□□□□□ -0.46
CLIP1-201ENST00000302528 HOOK3Q86VS8 718 aa12.18□□□□□ -0.46
CLIP1-201ENST00000302528 UPF3BQ9BZI7 483 aaKnown RBP12.18□□□□□ -0.46
CLIP1-201ENST00000302528 FILIP1Q7Z7B0 1213 aa12.18□□□□□ -0.46
CLIP1-201ENST00000302528 PDS5BQ9NTI5 1447 aa12.18□□□□□ -0.46
CLIP1-201ENST00000302528 IFFO1Q0D2I5 559 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 SF3B2Q13435 895 aaKnown RBP12.17□□□□□ -0.46
CLIP1-201ENST00000302528 LARP1BQ659C4 914 aaKnown RBP12.17□□□□□ -0.46
CLIP1-201ENST00000302528 TDRD9Q8NDG6 1382 aaKnown RBP12.17□□□□□ -0.46
CLIP1-201ENST00000302528 SMTNL1A8MU46 457 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 FEZ1Q99689 392 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 SPA17Q15506 151 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 IMMTQ16891 758 aaKnown RBP12.17□□□□□ -0.46
CLIP1-201ENST00000302528 ANKRD18BA2A2Z9 1011 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 ZSCAN25Q6NSZ9 544 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 SPATA32Q96LK8 384 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 UBAC1Q9BSL1 405 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 GOPCQ9HD26 462 aa12.17□□□□□ -0.46
CLIP1-201ENST00000302528 BCCIPQ9P287 314 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLIP1-201ENST00000302528 PRXQ9BXM0 1461 aa12.16□□□□□ -0.46
CLIP1-201ENST00000302528 GCOM1H8Y6P7 765 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-201ENST00000302528 MYZAPP0CAP1 466 aa12.16□□□□□ -0.46
CLIP1-201ENST00000302528 CTNNBL1Q8WYA6 563 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-201ENST00000302528 PUS7Q96PZ0 661 aaKnown RBP12.16□□□□□ -0.46
CLIP1-201ENST00000302528 USP5P45974 858 aa12.16□□□□□ -0.46
CLIP1-201ENST00000302528 PSMD1Q99460 953 aa12.16□□□□□ -0.46
CLIP1-201ENST00000302528 CHMP4BP1P59074 171 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 LUZP1Q86V48 1076 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 PPP4R3AQ6IN85 833 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 CCDC178Q5BJE1 867 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 LARP1Q6PKG0 1096 aaKnown RBP12.15□□□□□ -0.46
CLIP1-201ENST00000302528 TMEM87AQ8NBN3 555 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 USP47Q96K76 1375 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 MACROD2A1Z1Q3 448 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 SPDYE4A6NLX3 237 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 GNAI2P04899 355 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 CFAP100Q494V2 611 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 BRPF3Q9ULD4 1205 aa12.15□□□□□ -0.46
CLIP1-201ENST00000302528 TDO2P48775 406 aa12.15□□□□□ -0.47
CLIP1-201ENST00000302528 TNIP1Q15025 636 aa12.15□□□□□ -0.47
CLIP1-201ENST00000302528 MAP9Q49MG5 647 aa12.15□□□□□ -0.47
CLIP1-201ENST00000302528 PABPN1LA6NDY0 278 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms