RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 HTATSF1O43719 755 aaKnown RBP18.7■□□□□ 0.58
SHH-201ENST00000297261 MTERF4Q7Z6M4 381 aaKnown RBP18.7■□□□□ 0.58
SHH-201ENST00000297261 KIF1BO60333 1816 aa18.7■□□□□ 0.58
SHH-201ENST00000297261 E9PCH4 1651 aa18.7■□□□□ 0.58
SHH-201ENST00000297261 ISY1Q9ULR0 285 aaKnown RBP18.7■□□□□ 0.58
SHH-201ENST00000297261 NCKAP5LQ9HCH0 1330 aa18.7■□□□□ 0.58
SHH-201ENST00000297261 CCDC39Q9UFE4 941 aa18.69■□□□□ 0.58
SHH-201ENST00000297261 ACEP12821 1306 aa18.69■□□□□ 0.58
SHH-201ENST00000297261 THUMPD2Q9BTF0 503 aaKnown RBP18.69■□□□□ 0.58
SHH-201ENST00000297261 NECTIN2Q92692 538 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 TSPYL4Q9UJ04 414 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 PPIP5K1Q6PFW1 1433 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 SPHKAPQ2M3C7 1700 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 NPC1L1Q9UHC9 1359 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 INO80Q9ULG1 1556 aaPredicted RBP18.68■□□□□ 0.58
SHH-201ENST00000297261 XPCQ01831 940 aaPredicted RBP18.68■□□□□ 0.58
SHH-201ENST00000297261 TBC1D2Q9BYX2 928 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 ATP6V1DQ9Y5K8 247 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 POLR3AO14802 1390 aaPredicted RBP18.68■□□□□ 0.58
SHH-201ENST00000297261 TRPM1Q7Z4N2 1603 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 TEFQ10587 303 aa18.68■□□□□ 0.58
SHH-201ENST00000297261 C1orf141Q5JVX7 400 aa18.67■□□□□ 0.58
SHH-201ENST00000297261 ZRANB1Q9UGI0 708 aa18.67■□□□□ 0.58
SHH-201ENST00000297261 NFE2L2Q16236 605 aa18.66■□□□□ 0.58
SHH-201ENST00000297261 INTS3Q68E01 1043 aaKnown RBP18.66■□□□□ 0.58
SHH-201ENST00000297261 ERVK-7P63135 1459 aa18.66■□□□□ 0.58
SHH-201ENST00000297261 SBNO2Q9Y2G9 1366 aa18.66■□□□□ 0.58
SHH-201ENST00000297261 CDC45O75419 566 aa18.66■□□□□ 0.58
SHH-201ENST00000297261 PODXL2Q9NZ53 605 aa18.66■□□□□ 0.58
SHH-201ENST00000297261 UQCRHLA0A096LP55 91 aa18.66■□□□□ 0.58
SHH-201ENST00000297261 UQCRHP07919 91 aa18.66■□□□□ 0.58
SHH-201ENST00000297261 PLEKHH1Q9ULM0 1364 aa18.65■□□□□ 0.58
SHH-201ENST00000297261 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.65■□□□□ 0.58
SHH-201ENST00000297261 RNF17Q9BXT8 1623 aaKnown RBP18.65■□□□□ 0.58
SHH-201ENST00000297261 NKTRP30414 1462 aaKnown RBP18.65■□□□□ 0.58
SHH-201ENST00000297261 GOLGA6L19H0YKK7 550 aa18.65■□□□□ 0.58
SHH-201ENST00000297261 BECN2A8MW95 431 aa18.65■□□□□ 0.58
SHH-201ENST00000297261 ZSCAN30Q86W11 494 aa18.64■□□□□ 0.58
SHH-201ENST00000297261 API5Q9BZZ5 524 aaKnown RBP18.64■□□□□ 0.58
SHH-201ENST00000297261 C1orf115Q9H7X2 142 aa18.64■□□□□ 0.58
SHH-201ENST00000297261 HSP90B1P14625 803 aaKnown RBP18.64■□□□□ 0.57
SHH-201ENST00000297261 TWISTNBQ3B726 338 aaPredicted RBP18.64■□□□□ 0.57
SHH-201ENST00000297261 PANK2Q9BZ23 570 aa18.64■□□□□ 0.57
SHH-201ENST00000297261 IFT57Q9NWB7 429 aa18.63■□□□□ 0.57
SHH-201ENST00000297261 NOB1Q9ULX3 412 aaKnown RBP18.63■□□□□ 0.57
SHH-201ENST00000297261 EIF2S2P20042 333 aaKnown RBP18.63■□□□□ 0.57
SHH-201ENST00000297261 GNL2Q13823 731 aaKnown RBP18.63■□□□□ 0.57
SHH-201ENST00000297261 GAS2L2Q8NHY3 880 aa18.63■□□□□ 0.57
SHH-201ENST00000297261 CHMP4AQ9BY43 222 aa18.62■□□□□ 0.57
SHH-201ENST00000297261 NEK4P51957 841 aa18.62■□□□□ 0.57
SHH-201ENST00000297261 KDM5AP29375 1690 aaKnown RBP18.62■□□□□ 0.57
SHH-201ENST00000297261 VPS37CA5D8V6 355 aaPredicted RBP18.62■□□□□ 0.57
SHH-201ENST00000297261 PHF8Q9UPP1 1060 aa18.62■□□□□ 0.57
SHH-201ENST00000297261 RARSP54136 660 aaKnown RBP18.61■□□□□ 0.57
SHH-201ENST00000297261 DCTN1Q14203 1278 aa18.61■□□□□ 0.57
SHH-201ENST00000297261 DIAPH3Q9NSV4 1193 aa18.61■□□□□ 0.57
SHH-201ENST00000297261 K7ELQ4 463 aaPredicted RBP18.61■□□□□ 0.57
SHH-201ENST00000297261 CEP152O94986 1710 aa18.61■□□□□ 0.57
SHH-201ENST00000297261 ARHGAP31Q2M1Z3 1444 aa18.61■□□□□ 0.57
SHH-201ENST00000297261 XRCC6P12956 609 aaKnown RBP eCLIP18.61■□□□□ 0.57
SHH-201ENST00000297261 POLKQ9UBT6 870 aa18.61■□□□□ 0.57
SHH-201ENST00000297261 TMEM2Q9UHN6 1383 aa18.61■□□□□ 0.57
SHH-201ENST00000297261 MAP3K4Q9Y6R4 1608 aa18.6■□□□□ 0.57
SHH-201ENST00000297261 CT47B1P0C2W7 299 aaPredicted RBP18.6■□□□□ 0.57
SHH-201ENST00000297261 TTC21BQ7Z4L5 1316 aa18.6■□□□□ 0.57
SHH-201ENST00000297261 LTKP29376 864 aa18.6■□□□□ 0.57
SHH-201ENST00000297261 KIDINS220Q9ULH0 1771 aa18.6■□□□□ 0.57
SHH-201ENST00000297261 CCAR2Q8N163 923 aaKnown RBP18.6■□□□□ 0.57
SHH-201ENST00000297261 NLRP2Q9NX02 1062 aa18.6■□□□□ 0.57
SHH-201ENST00000297261 RIMBP3CA6NJZ7 1639 aa18.59■□□□□ 0.57
SHH-201ENST00000297261 RIMBP3BA6NNM3 1639 aa18.59■□□□□ 0.57
SHH-201ENST00000297261 RIMBP3Q9UFD9 1639 aa18.59■□□□□ 0.57
SHH-201ENST00000297261 MBD3O95983 291 aa18.59■□□□□ 0.57
SHH-201ENST00000297261 TPM4P67936 248 aa18.59■□□□□ 0.57
SHH-201ENST00000297261 FOXO3O43524 673 aa18.59■□□□□ 0.57
SHH-201ENST00000297261 MVPQ14764 893 aaKnown RBP18.58■□□□□ 0.57
SHH-201ENST00000297261 PRDM10Q9NQV6 1147 aa18.58■□□□□ 0.57
SHH-201ENST00000297261 HMGN5P82970 282 aaKnown RBP18.58■□□□□ 0.56
SHH-201ENST00000297261 ATF7IPQ6VMQ6 1270 aa18.58■□□□□ 0.56
SHH-201ENST00000297261 MADDQ8WXG6 1647 aa18.58■□□□□ 0.56
SHH-201ENST00000297261 FKBP5Q13451 457 aaPredicted RBP18.58■□□□□ 0.56
SHH-201ENST00000297261 KCNA6P17658 529 aa18.57■□□□□ 0.56
SHH-201ENST00000297261 RABEP1Q15276 862 aa18.57■□□□□ 0.56
SHH-201ENST00000297261 CIZ1Q9ULV3 898 aaPredicted RBP18.57■□□□□ 0.56
SHH-201ENST00000297261 TBX22Q9Y458 520 aa18.57■□□□□ 0.56
SHH-201ENST00000297261 PPRC1Q5VV67 1664 aaKnown RBP18.57■□□□□ 0.56
SHH-201ENST00000297261 SF3A1Q15459 793 aaKnown RBP18.57■□□□□ 0.56
SHH-201ENST00000297261 ABCC11Q96J66 1382 aa18.57■□□□□ 0.56
SHH-201ENST00000297261 MCM10Q7L590 875 aa18.57■□□□□ 0.56
SHH-201ENST00000297261 RAPGEF4Q8WZA2 1011 aa18.57■□□□□ 0.56
SHH-201ENST00000297261 SMC3Q9UQE7 1217 aa18.57■□□□□ 0.56
SHH-201ENST00000297261 ZNF330Q9Y3S2 320 aaPredicted RBP18.57■□□□□ 0.56
SHH-201ENST00000297261 IGHDP01880 384 aa18.56■□□□□ 0.56
SHH-201ENST00000297261 TSPY26PQ9H489 355 aa18.56■□□□□ 0.56
SHH-201ENST00000297261 H3BQV1 296 aa18.56■□□□□ 0.56
SHH-201ENST00000297261 IFFO2Q5TF58 517 aa18.56■□□□□ 0.56
SHH-201ENST00000297261 SSH1Q8WYL5 1049 aa18.56■□□□□ 0.56
SHH-201ENST00000297261 SPINK5Q9NQ38 1064 aaPredicted RBP18.56■□□□□ 0.56
SHH-201ENST00000297261 LMTK2Q8IWU2 1503 aa18.56■□□□□ 0.56
SHH-201ENST00000297261 BICD2Q8TD16 824 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms