RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 CLEC17AQ6ZS10 378 aa12.59□□□□□ -0.39
LMX1A-201ENST00000294816 SIRT2Q8IXJ6 389 aa12.59□□□□□ -0.39
LMX1A-201ENST00000294816 ATAD2Q6PL18 1390 aa12.59□□□□□ -0.39
LMX1A-201ENST00000294816 LRSAM1Q6UWE0 723 aa12.58□□□□□ -0.39
LMX1A-201ENST00000294816 TSPYL6Q8N831 410 aa12.58□□□□□ -0.39
LMX1A-201ENST00000294816 PDLIM2Q96JY6 352 aa12.58□□□□□ -0.39
LMX1A-201ENST00000294816 CASC1Q6TDU7 716 aa12.58□□□□□ -0.4
LMX1A-201ENST00000294816 HMOX1P09601 288 aa12.58□□□□□ -0.4
LMX1A-201ENST00000294816 PRKAR2BP31323 418 aa12.58□□□□□ -0.4
LMX1A-201ENST00000294816 INTS3Q68E01 1043 aaKnown RBP12.58□□□□□ -0.4
LMX1A-201ENST00000294816 PLEKHM2Q8IWE5 1019 aa12.57□□□□□ -0.4
LMX1A-201ENST00000294816 OTUD7AQ8TE49 926 aaPredicted RBP12.57□□□□□ -0.4
LMX1A-201ENST00000294816 ZNF830Q96NB3 372 aaPredicted RBP12.57□□□□□ -0.4
LMX1A-201ENST00000294816 PLCB2Q00722 1185 aa12.57□□□□□ -0.4
LMX1A-201ENST00000294816 KIAA2012Q0VF49 1180 aa12.57□□□□□ -0.4
LMX1A-201ENST00000294816 MTERF4Q7Z6M4 381 aaKnown RBP12.57□□□□□ -0.4
LMX1A-201ENST00000294816 USP26Q9BXU7 913 aa12.57□□□□□ -0.4
LMX1A-201ENST00000294816 CWC22Q9HCG8 908 aaKnown RBP12.57□□□□□ -0.4
LMX1A-201ENST00000294816 IL16Q14005 1332 aa12.57□□□□□ -0.4
LMX1A-201ENST00000294816 SBNO2Q9Y2G9 1366 aa12.57□□□□□ -0.4
LMX1A-201ENST00000294816 FAM177BA6PVY3 158 aa12.56□□□□□ -0.4
LMX1A-201ENST00000294816 SMARCA5O60264 1052 aaPredicted RBP12.56□□□□□ -0.4
LMX1A-201ENST00000294816 FBLN1P23142 703 aa12.56□□□□□ -0.4
LMX1A-201ENST00000294816 MAP3K4Q9Y6R4 1608 aa12.56□□□□□ -0.4
LMX1A-201ENST00000294816 PLCH2O75038 1416 aa12.56□□□□□ -0.4
LMX1A-201ENST00000294816 MRPL50Q8N5N7 158 aaKnown RBP12.56□□□□□ -0.4
LMX1A-201ENST00000294816 CFAP74Q9C0B2 1584 aa12.56□□□□□ -0.4
LMX1A-201ENST00000294816 TTC22Q5TAA0 569 aa12.55□□□□□ -0.4
LMX1A-201ENST00000294816 CYP2E1P05181 493 aaPredicted RBP12.55□□□□□ -0.4
LMX1A-201ENST00000294816 SMAP1Q8IYB5 467 aaPredicted RBP12.55□□□□□ -0.4
LMX1A-201ENST00000294816 TSPY26PQ9H489 355 aa12.55□□□□□ -0.4
LMX1A-201ENST00000294816 ZDHHC9Q9Y397 364 aa12.55□□□□□ -0.4
LMX1A-201ENST00000294816 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.55□□□□□ -0.4
LMX1A-201ENST00000294816 NCBP3Q53F19 620 aaKnown RBP12.55□□□□□ -0.4
LMX1A-201ENST00000294816 C14orf93Q9H972 538 aaKnown RBP12.55□□□□□ -0.4
LMX1A-201ENST00000294816 GDPD2Q9HCC8 539 aa12.55□□□□□ -0.4
LMX1A-201ENST00000294816 ANKRD36BQ8N2N9 1353 aa12.54□□□□□ -0.4
LMX1A-201ENST00000294816 VAMP4O75379 141 aa12.54□□□□□ -0.4
LMX1A-201ENST00000294816 MCM5P33992 734 aa12.54□□□□□ -0.4
LMX1A-201ENST00000294816 NEK4P51957 841 aa12.54□□□□□ -0.4
LMX1A-201ENST00000294816 CBX1P83916 185 aa12.54□□□□□ -0.4
LMX1A-201ENST00000294816 C17orf53Q8N3J3 647 aaPredicted RBP12.54□□□□□ -0.4
LMX1A-201ENST00000294816 PLEKHG5O94827 1062 aa12.53□□□□□ -0.4
LMX1A-201ENST00000294816 SDSP20132 328 aa12.53□□□□□ -0.4
LMX1A-201ENST00000294816 GGT6Q6P531 493 aa12.53□□□□□ -0.4
LMX1A-201ENST00000294816 MBD3O95983 291 aa12.53□□□□□ -0.4
LMX1A-201ENST00000294816 MINK1Q8N4C8 1332 aaPredicted RBP12.53□□□□□ -0.4
LMX1A-201ENST00000294816 TWISTNBQ3B726 338 aaPredicted RBP12.53□□□□□ -0.4
LMX1A-201ENST00000294816 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.53□□□□□ -0.4
LMX1A-201ENST00000294816 MYOM2P54296 1465 aa12.53□□□□□ -0.4
LMX1A-201ENST00000294816 CFAP44Q96MT7 982 aa12.52□□□□□ -0.4
LMX1A-201ENST00000294816 ADGRL1O94910 1474 aa12.52□□□□□ -0.41
LMX1A-201ENST00000294816 NSD2O96028 1365 aa12.52□□□□□ -0.41
LMX1A-201ENST00000294816 REC8O95072 547 aa12.52□□□□□ -0.41
LMX1A-201ENST00000294816 CCDC94Q9BW85 323 aaPredicted RBP12.52□□□□□ -0.41
LMX1A-201ENST00000294816 KIAA1210Q9ULL0 1709 aa12.52□□□□□ -0.41
LMX1A-201ENST00000294816 A0A1W2PP64 1363 aa12.51□□□□□ -0.41
LMX1A-201ENST00000294816 FYB1O15117 783 aa12.51□□□□□ -0.41
LMX1A-201ENST00000294816 OSCARQ8IYS5 282 aa12.51□□□□□ -0.41
LMX1A-201ENST00000294816 SYAP1Q96A49 352 aaPredicted RBP12.51□□□□□ -0.41
LMX1A-201ENST00000294816 PHACTR3Q96KR7 559 aa12.51□□□□□ -0.41
LMX1A-201ENST00000294816 API5Q9BZZ5 524 aaKnown RBP12.51□□□□□ -0.41
LMX1A-201ENST00000294816 USP25Q9UHP3 1055 aa12.51□□□□□ -0.41
LMX1A-201ENST00000294816 SHROOM2Q13796 1616 aa12.51□□□□□ -0.41
LMX1A-201ENST00000294816 TTC12Q9H892 705 aaPredicted RBP12.51□□□□□ -0.41
LMX1A-201ENST00000294816 MBIPQ9NS73 344 aa12.5□□□□□ -0.41
LMX1A-201ENST00000294816 TERF2IPQ9NYB0 399 aa12.5□□□□□ -0.41
LMX1A-201ENST00000294816 ADGRB2O60241 1585 aa12.5□□□□□ -0.41
LMX1A-201ENST00000294816 TMX3Q96JJ7 454 aa12.5□□□□□ -0.41
LMX1A-201ENST00000294816 GNAI1P63096 354 aa12.5□□□□□ -0.41
LMX1A-201ENST00000294816 C8orf58Q8NAV2 365 aa12.5□□□□□ -0.41
LMX1A-201ENST00000294816 ABCC1P33527 1531 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 DCTPP1Q9H773 170 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 TET3O43151 1660 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 ERC2O15083 957 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 FCHSD2O94868 740 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 MYRIPQ8NFW9 859 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 ARHGAP45Q92619 1136 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 ZNF428Q96B54 188 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 QRICH2Q9H0J4 1663 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 CFAP65Q6ZU64 1925 aaKnown RBP12.49□□□□□ -0.41
LMX1A-201ENST00000294816 DCTN1Q14203 1278 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 TSHZ3Q63HK5 1081 aa12.49□□□□□ -0.41
LMX1A-201ENST00000294816 NFE2L2Q16236 605 aa12.48□□□□□ -0.41
LMX1A-201ENST00000294816 PPP4R3BQ5MIZ7 849 aa12.48□□□□□ -0.41
LMX1A-201ENST00000294816 CHD1O14646 1710 aa12.48□□□□□ -0.41
LMX1A-201ENST00000294816 SPDYE4A6NLX3 237 aa12.48□□□□□ -0.41
LMX1A-201ENST00000294816 GADD45BO75293 160 aaPredicted RBP12.48□□□□□ -0.41
LMX1A-201ENST00000294816 ABCC4O15439 1325 aa12.48□□□□□ -0.41
LMX1A-201ENST00000294816 FAM83GA6ND36 823 aa12.47□□□□□ -0.41
LMX1A-201ENST00000294816 NOLC1Q14978 699 aaKnown RBP eCLIP12.47□□□□□ -0.41
LMX1A-201ENST00000294816 HDGFL2Q7Z4V5 671 aaPredicted RBP12.47□□□□□ -0.41
LMX1A-201ENST00000294816 KIF1BO60333 1816 aa12.47□□□□□ -0.41
LMX1A-201ENST00000294816 MED14O60244 1454 aa12.47□□□□□ -0.41
LMX1A-201ENST00000294816 PHF14O94880 888 aa12.47□□□□□ -0.41
LMX1A-201ENST00000294816 PPP6R1Q9UPN7 881 aa12.47□□□□□ -0.41
LMX1A-201ENST00000294816 UPF3BQ9BZI7 483 aaKnown RBP12.46□□□□□ -0.41
LMX1A-201ENST00000294816 ANO2Q9NQ90 1003 aa12.46□□□□□ -0.41
LMX1A-201ENST00000294816 ADCY5O95622 1261 aa12.46□□□□□ -0.41
LMX1A-201ENST00000294816 ZFYVE16Q7Z3T8 1539 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms