RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 TWISTNBQ3B726 338 aaPredicted RBP20.65■□□□□ 0.9
NOTCH3-201ENST00000263388 SAMD1Q6SPF0 538 aaPredicted RBP20.65■□□□□ 0.9
NOTCH3-201ENST00000263388 ABTB2Q8N961 1025 aa20.65■□□□□ 0.9
NOTCH3-201ENST00000263388 TTC39AQ5SRH9 613 aa20.65■□□□□ 0.9
NOTCH3-201ENST00000263388 DEF6Q9H4E7 631 aa20.65■□□□□ 0.9
NOTCH3-201ENST00000263388 PDZRN3Q9UPQ7 1066 aa20.65■□□□□ 0.9
NOTCH3-201ENST00000263388 PLEKHO1Q53GL0 409 aaPredicted RBP20.65■□□□□ 0.9
NOTCH3-201ENST00000263388 TOP2BQ02880 1626 aa20.65■□□□□ 0.9
NOTCH3-201ENST00000263388 CCDC181Q5TID7 509 aa20.64■□□□□ 0.9
NOTCH3-201ENST00000263388 NLRP2Q9NX02 1062 aa20.64■□□□□ 0.9
NOTCH3-201ENST00000263388 EZRP15311 586 aaKnown RBP20.64■□□□□ 0.89
NOTCH3-201ENST00000263388 PPP2R1AP30153 589 aa20.64■□□□□ 0.89
NOTCH3-201ENST00000263388 CCDC112Q8NEF3 446 aa20.64■□□□□ 0.89
NOTCH3-201ENST00000263388 NACAP1Q9BZK3 213 aa20.64■□□□□ 0.89
NOTCH3-201ENST00000263388 CUL7Q14999 1698 aa20.64■□□□□ 0.89
NOTCH3-201ENST00000263388 NEFHP12036 1026 aa20.64■□□□□ 0.89
NOTCH3-201ENST00000263388 CEBPZQ03701 1054 aaKnown RBP20.64■□□□□ 0.89
NOTCH3-201ENST00000263388 STK11IPQ8N1F8 1099 aa20.64■□□□□ 0.89
NOTCH3-201ENST00000263388 ENOX2Q16206 610 aaKnown RBP20.63■□□□□ 0.89
NOTCH3-201ENST00000263388 WDR63Q8IWG1 891 aa20.63■□□□□ 0.89
NOTCH3-201ENST00000263388 NLRP6P59044 892 aa20.63■□□□□ 0.89
NOTCH3-201ENST00000263388 GRPEL1Q9HAV7 217 aa20.63■□□□□ 0.89
NOTCH3-201ENST00000263388 TMEM132AQ24JP5 1023 aa20.62■□□□□ 0.89
NOTCH3-201ENST00000263388 C9orf84Q5VXU9 1444 aa20.62■□□□□ 0.89
NOTCH3-201ENST00000263388 CIZ1Q9ULV3 898 aaPredicted RBP20.62■□□□□ 0.89
NOTCH3-201ENST00000263388 PRKAR2BP31323 418 aa20.61■□□□□ 0.89
NOTCH3-201ENST00000263388 ZSCAN25Q6NSZ9 544 aa20.61■□□□□ 0.89
NOTCH3-201ENST00000263388 CNNM1Q9NRU3 951 aa20.61■□□□□ 0.89
NOTCH3-201ENST00000263388 CFTRP13569 1480 aa20.61■□□□□ 0.89
NOTCH3-201ENST00000263388 PTPN23Q9H3S7 1636 aa20.61■□□□□ 0.89
NOTCH3-201ENST00000263388 POLA1P09884 1462 aaPredicted RBP20.61■□□□□ 0.89
NOTCH3-201ENST00000263388 CCDC69A6NI79 296 aa20.61■□□□□ 0.89
NOTCH3-201ENST00000263388 KIAA1107Q9UPP5 1409 aa20.6■□□□□ 0.89
NOTCH3-201ENST00000263388 SYNJ1O43426 1573 aa20.6■□□□□ 0.89
NOTCH3-201ENST00000263388 BACH2Q9BYV9 841 aa20.6■□□□□ 0.89
NOTCH3-201ENST00000263388 MTMR7Q9Y216 660 aa20.6■□□□□ 0.89
NOTCH3-201ENST00000263388 GBP2P32456 591 aaPredicted RBP20.6■□□□□ 0.89
NOTCH3-201ENST00000263388 LARP1BQ659C4 914 aaKnown RBP20.6■□□□□ 0.89
NOTCH3-201ENST00000263388 PKNOX2Q96KN3 472 aa20.6■□□□□ 0.89
NOTCH3-201ENST00000263388 ATP2B1P20020 1258 aa20.59■□□□□ 0.89
NOTCH3-201ENST00000263388 SETD1BQ9UPS6 1966 aaKnown RBP20.59■□□□□ 0.89
NOTCH3-201ENST00000263388 SKIDA1Q1XH10 827 aa20.59■□□□□ 0.89
NOTCH3-201ENST00000263388 ATF7IPQ6VMQ6 1270 aa20.59■□□□□ 0.89
NOTCH3-201ENST00000263388 ERBINQ96RT1 1412 aa20.59■□□□□ 0.89
NOTCH3-201ENST00000263388 C1orf115Q9H7X2 142 aa20.59■□□□□ 0.89
NOTCH3-201ENST00000263388 KRT32Q14532 448 aa20.58■□□□□ 0.88
NOTCH3-201ENST00000263388 MVPQ14764 893 aaKnown RBP20.58■□□□□ 0.88
NOTCH3-201ENST00000263388 HDGFL1Q5TGJ6 251 aa20.58■□□□□ 0.88
NOTCH3-201ENST00000263388 CHD1LQ86WJ1 897 aa20.58■□□□□ 0.88
NOTCH3-201ENST00000263388 RAD54L2Q9Y4B4 1467 aa20.58■□□□□ 0.88
NOTCH3-201ENST00000263388 PNISRQ8TF01 805 aaKnown RBP20.57■□□□□ 0.88
NOTCH3-201ENST00000263388 CDCA7LQ96GN5 454 aa20.57■□□□□ 0.88
NOTCH3-201ENST00000263388 ZNF428Q96B54 188 aa20.57■□□□□ 0.88
NOTCH3-201ENST00000263388 NOL7Q9UMY1 257 aaKnown RBP20.57■□□□□ 0.88
NOTCH3-201ENST00000263388 SLC4A2P04920 1241 aa20.57■□□□□ 0.88
NOTCH3-201ENST00000263388 EXOSC9Q06265 439 aaKnown RBP20.56■□□□□ 0.88
NOTCH3-201ENST00000263388 ZNF644Q9H582 1327 aaPredicted RBP20.56■□□□□ 0.88
NOTCH3-201ENST00000263388 UQCRHLA0A096LP55 91 aa20.56■□□□□ 0.88
NOTCH3-201ENST00000263388 UQCRHP07919 91 aa20.56■□□□□ 0.88
NOTCH3-201ENST00000263388 KIF14Q15058 1648 aa20.56■□□□□ 0.88
NOTCH3-201ENST00000263388 SPATA32Q96LK8 384 aa20.56■□□□□ 0.88
NOTCH3-201ENST00000263388 BRPF3Q9ULD4 1205 aa20.56■□□□□ 0.88
NOTCH3-201ENST00000263388 SMTNL1A8MU46 457 aa20.56■□□□□ 0.88
NOTCH3-201ENST00000263388 RRP9O43818 475 aaKnown RBP20.55■□□□□ 0.88
NOTCH3-201ENST00000263388 IGF1RP08069 1367 aa20.55■□□□□ 0.88
NOTCH3-201ENST00000263388 BLOC1S2Q6QNY1 142 aa20.55■□□□□ 0.88
NOTCH3-201ENST00000263388 NUTM2GQ5VZR2 741 aa20.55■□□□□ 0.88
NOTCH3-201ENST00000263388 TMEM132EQ6IEE7 984 aa20.55■□□□□ 0.88
NOTCH3-201ENST00000263388 CEP57L1Q8IYX8 460 aa20.54■□□□□ 0.88
NOTCH3-201ENST00000263388 KDM4AO75164 1064 aa20.54■□□□□ 0.88
NOTCH3-201ENST00000263388 CTNNA3Q9UI47 895 aa20.54■□□□□ 0.88
NOTCH3-201ENST00000263388 GRIN2BQ13224 1484 aa20.54■□□□□ 0.88
NOTCH3-201ENST00000263388 CCDC57Q2TAC2 916 aa20.54■□□□□ 0.88
NOTCH3-201ENST00000263388 ZSCAN31Q96LW9 406 aaPredicted RBP20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 KIF2AO00139 706 aaPredicted RBP20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 NUP62CLQ9H1M0 184 aa20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 DESP17661 470 aa20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 ZNF397Q8NF99 534 aaPredicted RBP20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 FAM135AQ9P2D6 1515 aa20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 ITSN2Q9NZM3 1697 aa20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 OSCARQ8IYS5 282 aa20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 WASF1Q92558 559 aa20.53■□□□□ 0.88
NOTCH3-201ENST00000263388 ZNF692Q9BU19 519 aaPredicted RBP20.52■□□□□ 0.88
NOTCH3-201ENST00000263388 CENPHQ9H3R5 247 aa20.52■□□□□ 0.88
NOTCH3-201ENST00000263388 STK3Q13188 491 aa20.52■□□□□ 0.88
NOTCH3-201ENST00000263388 TANGO6Q9C0B7 1094 aa20.52■□□□□ 0.88
NOTCH3-201ENST00000263388 BMP2KQ9NSY1 1161 aaPredicted RBP20.52■□□□□ 0.88
NOTCH3-201ENST00000263388 CEP131Q9UPN4 1083 aa20.52■□□□□ 0.88
NOTCH3-201ENST00000263388 RBM10P98175 930 aaKnown RBP20.51■□□□□ 0.87
NOTCH3-201ENST00000263388 PAF1Q8N7H5 531 aa20.51■□□□□ 0.87
NOTCH3-201ENST00000263388 PDCL2Q8N4E4 241 aa20.51■□□□□ 0.87
NOTCH3-201ENST00000263388 PDCL3Q9H2J4 239 aa20.51■□□□□ 0.87
NOTCH3-201ENST00000263388 PPP6R1Q9UPN7 881 aa20.51■□□□□ 0.87
NOTCH3-201ENST00000263388 ANKRD62A6NC57 917 aa20.51■□□□□ 0.87
NOTCH3-201ENST00000263388 PLEKHH1Q9ULM0 1364 aa20.5■□□□□ 0.87
NOTCH3-201ENST00000263388 CYB5RLQ6IPT4 315 aa20.5■□□□□ 0.87
NOTCH3-201ENST00000263388 FAM177A1Q8N128 213 aaPredicted RBP20.5■□□□□ 0.87
NOTCH3-201ENST00000263388 UPF3BQ9BZI7 483 aaKnown RBP20.5■□□□□ 0.87
NOTCH3-201ENST00000263388 MPHOSPH8Q99549 860 aa20.5■□□□□ 0.87
NOTCH3-201ENST00000263388 TATP17735 454 aaPredicted RBP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms