RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 RRS1Q15050 365 aaKnown RBP12.82□□□□□ -0.36
COPB1-201ENST00000249923 TXNDC2Q86VQ3 553 aa12.82□□□□□ -0.36
COPB1-201ENST00000249923 STAG3Q9UJ98 1225 aa12.82□□□□□ -0.36
COPB1-201ENST00000249923 FAM83GA6ND36 823 aa12.82□□□□□ -0.36
COPB1-201ENST00000249923 SIRT2Q8IXJ6 389 aa12.82□□□□□ -0.36
COPB1-201ENST00000249923 NRKQ7Z2Y5 1582 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 PTCH1Q13635 1447 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 PIK3R4Q99570 1358 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 NFE2L2Q16236 605 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 ALDH1L2Q3SY69 923 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 C1orf115Q9H7X2 142 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 MBIPQ9NS73 344 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 KIF16BQ96L93 1317 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 BRPF1P55201 1214 aaPredicted RBP12.81□□□□□ -0.36
COPB1-201ENST00000249923 MRPL50Q8N5N7 158 aaKnown RBP12.81□□□□□ -0.36
COPB1-201ENST00000249923 ZBTB7BO15156 539 aaPredicted RBP12.81□□□□□ -0.36
COPB1-201ENST00000249923 NUCB1Q02818 461 aa12.81□□□□□ -0.36
COPB1-201ENST00000249923 MFAP1P55081 439 aaKnown RBP12.8□□□□□ -0.36
COPB1-201ENST00000249923 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.8□□□□□ -0.36
COPB1-201ENST00000249923 TECPR2O15040 1411 aa12.8□□□□□ -0.36
COPB1-201ENST00000249923 PEAK1Q9H792 1746 aa12.79□□□□□ -0.36
COPB1-201ENST00000249923 ELL2O00472 640 aaPredicted RBP12.79□□□□□ -0.36
COPB1-201ENST00000249923 DCTN1Q14203 1278 aa12.79□□□□□ -0.36
COPB1-201ENST00000249923 C8orf58Q8NAV2 365 aa12.79□□□□□ -0.36
COPB1-201ENST00000249923 AATKQ6ZMQ8 1374 aa12.79□□□□□ -0.36
COPB1-201ENST00000249923 ITSN1Q15811 1721 aa12.79□□□□□ -0.36
COPB1-201ENST00000249923 LNPKQ9C0E8 428 aa12.79□□□□□ -0.36
COPB1-201ENST00000249923 C22orf23Q9BZE7 217 aa12.78□□□□□ -0.36
COPB1-201ENST00000249923 NUDT16Q96DE0 195 aaKnown RBP12.78□□□□□ -0.36
COPB1-201ENST00000249923 ARID3AQ99856 593 aa12.78□□□□□ -0.36
COPB1-201ENST00000249923 ROBO2Q9HCK4 1378 aa12.78□□□□□ -0.36
COPB1-201ENST00000249923 ABCC4O15439 1325 aa12.78□□□□□ -0.36
COPB1-201ENST00000249923 AEBP1Q8IUX7 1158 aa12.78□□□□□ -0.36
COPB1-201ENST00000249923 KIF13AQ9H1H9 1805 aa12.78□□□□□ -0.36
COPB1-201ENST00000249923 TOPAZ1Q8N9V7 1692 aa12.77□□□□□ -0.36
COPB1-201ENST00000249923 UBR1Q8IWV7 1749 aa12.77□□□□□ -0.36
COPB1-201ENST00000249923 ZNF692Q9BU19 519 aaPredicted RBP12.77□□□□□ -0.36
COPB1-201ENST00000249923 BECN1Q14457 450 aa12.76□□□□□ -0.37
COPB1-201ENST00000249923 RGS12O14924 1447 aa12.76□□□□□ -0.37
COPB1-201ENST00000249923 KRT24Q2M2I5 525 aa12.76□□□□□ -0.37
COPB1-201ENST00000249923 KIF2CQ99661 725 aa12.76□□□□□ -0.37
COPB1-201ENST00000249923 RGPD1P0DJD0 1748 aa12.76□□□□□ -0.37
COPB1-201ENST00000249923 CHD1LQ86WJ1 897 aa12.76□□□□□ -0.37
COPB1-201ENST00000249923 IFT57Q9NWB7 429 aa12.76□□□□□ -0.37
COPB1-201ENST00000249923 PPP6R1Q9UPN7 881 aa12.76□□□□□ -0.37
COPB1-201ENST00000249923 ADAMTS13Q76LX8 1427 aa12.75□□□□□ -0.37
COPB1-201ENST00000249923 NALCNQ8IZF0 1738 aa12.75□□□□□ -0.37
COPB1-201ENST00000249923 NCOA3Q9Y6Q9 1424 aa12.75□□□□□ -0.37
COPB1-201ENST00000249923 RIMS1Q86UR5 1692 aaKnown RBP12.75□□□□□ -0.37
COPB1-201ENST00000249923 ZBTB7CA1YPR0 619 aa12.75□□□□□ -0.37
COPB1-201ENST00000249923 IPO8O15397 1037 aaKnown RBP12.75□□□□□ -0.37
COPB1-201ENST00000249923 DDIT3P35638 169 aa12.74□□□□□ -0.37
COPB1-201ENST00000249923 PNNQ9H307 717 aaKnown RBP12.74□□□□□ -0.37
COPB1-201ENST00000249923 UPF2Q9HAU5 1272 aaKnown RBP12.74□□□□□ -0.37
COPB1-201ENST00000249923 CCDC61Q9Y6R9 512 aa12.74□□□□□ -0.37
COPB1-201ENST00000249923 CD2BP2O95400 341 aaKnown RBP12.74□□□□□ -0.37
COPB1-201ENST00000249923 CFAP44Q96MT7 982 aa12.74□□□□□ -0.37
COPB1-201ENST00000249923 TWISTNBQ3B726 338 aaPredicted RBP12.73□□□□□ -0.37
COPB1-201ENST00000249923 OVOS2A0A0J9YW53 1432 aa12.73□□□□□ -0.37
COPB1-201ENST00000249923 OVOS2Q6IE36 1432 aa12.73□□□□□ -0.37
COPB1-201ENST00000249923 ARHGAP45Q92619 1136 aa12.73□□□□□ -0.37
COPB1-201ENST00000249923 RBM25P49756 843 aaKnown RBP12.72□□□□□ -0.37
COPB1-201ENST00000249923 EIF4A2Q14240 407 aaKnown RBP12.72□□□□□ -0.37
COPB1-201ENST00000249923 ZNF428Q96B54 188 aa12.72□□□□□ -0.37
COPB1-201ENST00000249923 GNAI1P63096 354 aa12.72□□□□□ -0.37
COPB1-201ENST00000249923 PTPRUQ92729 1446 aa12.71□□□□□ -0.37
COPB1-201ENST00000249923 ATP10DQ9P241 1426 aa12.71□□□□□ -0.37
COPB1-201ENST00000249923 HSP90AA1P07900 732 aaKnown RBP12.71□□□□□ -0.37
COPB1-201ENST00000249923 COG3Q96JB2 828 aa12.71□□□□□ -0.37
COPB1-201ENST00000249923 TMEM2Q9UHN6 1383 aa12.71□□□□□ -0.38
COPB1-201ENST00000249923 BMP2KLQ5H9B9 411 aa12.71□□□□□ -0.38
COPB1-201ENST00000249923 ANKRD45Q5TZF3 282 aa12.71□□□□□ -0.38
COPB1-201ENST00000249923 NUTM2FA1L443 756 aa12.7□□□□□ -0.38
COPB1-201ENST00000249923 GSPT1P15170 499 aaKnown RBP12.7□□□□□ -0.38
COPB1-201ENST00000249923 LTKP29376 864 aa12.7□□□□□ -0.38
COPB1-201ENST00000249923 VSIG10Q8N0Z9 540 aa12.7□□□□□ -0.38
COPB1-201ENST00000249923 TPRNQ4KMQ1 711 aa12.7□□□□□ -0.38
COPB1-201ENST00000249923 FOXD4L1Q9NU39 408 aa12.7□□□□□ -0.38
COPB1-201ENST00000249923 SSH2Q76I76 1423 aa12.69□□□□□ -0.38
COPB1-201ENST00000249923 HSP90AB2PQ58FF8 381 aa12.69□□□□□ -0.38
COPB1-201ENST00000249923 MCM10Q7L590 875 aa12.69□□□□□ -0.38
COPB1-201ENST00000249923 TBC1D9Q6ZT07 1266 aa12.69□□□□□ -0.38
COPB1-201ENST00000249923 SIRT1Q96EB6 747 aa12.69□□□□□ -0.38
COPB1-201ENST00000249923 TTC21BQ7Z4L5 1316 aa12.69□□□□□ -0.38
COPB1-201ENST00000249923 RGPD8O14715 1765 aaPredicted RBP12.68□□□□□ -0.38
COPB1-201ENST00000249923 SULT6B1Q6IMI4 303 aa12.68□□□□□ -0.38
COPB1-201ENST00000249923 RBM42Q9BTD8 480 aaKnown RBP12.68□□□□□ -0.38
COPB1-201ENST00000249923 ACEP12821 1306 aa12.68□□□□□ -0.38
COPB1-201ENST00000249923 MCM4P33991 863 aa12.68□□□□□ -0.38
COPB1-201ENST00000249923 TNRQ92752 1358 aa12.68□□□□□ -0.38
COPB1-201ENST00000249923 USP6P35125 1406 aa12.68□□□□□ -0.38
COPB1-201ENST00000249923 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.67□□□□□ -0.38
COPB1-201ENST00000249923 OTUD7AQ8TE49 926 aaPredicted RBP12.67□□□□□ -0.38
COPB1-201ENST00000249923 FMN2Q9NZ56 1722 aa12.67□□□□□ -0.38
COPB1-201ENST00000249923 CRB1P82279 1406 aa12.67□□□□□ -0.38
COPB1-201ENST00000249923 C16orf71Q8IYS4 520 aaPredicted RBP12.67□□□□□ -0.38
COPB1-201ENST00000249923 GCC1Q96CN9 775 aa12.67□□□□□ -0.38
COPB1-201ENST00000249923 FOXO3O43524 673 aa12.67□□□□□ -0.38
COPB1-201ENST00000249923 MARF1Q9Y4F3 1742 aaKnown RBP12.66□□□□□ -0.38
COPB1-201ENST00000249923 CHL1O00533 1208 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms