RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 COG3Q96JB2 828 aa11.55□□□□□ -0.56
VPS4B-201ENST00000238497 SPATA31A1Q5TZJ5 1347 aa11.55□□□□□ -0.56
VPS4B-201ENST00000238497 FBLN1P23142 703 aa11.55□□□□□ -0.56
VPS4B-201ENST00000238497 PANK3Q9H999 370 aa11.55□□□□□ -0.56
VPS4B-201ENST00000238497 GGNBP2Q9H3C7 697 aa11.55□□□□□ -0.56
VPS4B-201ENST00000238497 AXIN2Q9Y2T1 843 aa11.55□□□□□ -0.56
VPS4B-201ENST00000238497 A0A1W2PP64 1363 aa11.55□□□□□ -0.56
VPS4B-201ENST00000238497 B4GALNT3Q6L9W6 998 aa11.54□□□□□ -0.56
VPS4B-201ENST00000238497 ALS2Q96Q42 1657 aa11.54□□□□□ -0.56
VPS4B-201ENST00000238497 BRD4O60885 1362 aaPredicted RBP11.54□□□□□ -0.56
VPS4B-201ENST00000238497 AMPHP49418 695 aa11.53□□□□□ -0.56
VPS4B-201ENST00000238497 PPM1GO15355 546 aaPredicted RBP11.53□□□□□ -0.56
VPS4B-201ENST00000238497 ARHGEF25Q86VW2 580 aa11.53□□□□□ -0.56
VPS4B-201ENST00000238497 GLI3P10071 1580 aa11.53□□□□□ -0.56
VPS4B-201ENST00000238497 SSH2Q76I76 1423 aa11.53□□□□□ -0.56
VPS4B-201ENST00000238497 MARF1Q9Y4F3 1742 aaKnown RBP11.53□□□□□ -0.56
VPS4B-201ENST00000238497 TRIM37O94972 964 aa11.53□□□□□ -0.56
VPS4B-201ENST00000238497 BAG6P46379 1132 aa11.52□□□□□ -0.57
VPS4B-201ENST00000238497 ONECUT3O60422 494 aaPredicted RBP11.52□□□□□ -0.57
VPS4B-201ENST00000238497 TOPAZ1Q8N9V7 1692 aa11.51□□□□□ -0.57
VPS4B-201ENST00000238497 CPDO75976 1380 aa11.51□□□□□ -0.57
VPS4B-201ENST00000238497 PLCH1Q4KWH8 1693 aa11.51□□□□□ -0.57
VPS4B-201ENST00000238497 DDB1Q16531 1140 aa11.51□□□□□ -0.57
VPS4B-201ENST00000238497 CPSF1Q10570 1443 aaKnown RBP11.51□□□□□ -0.57
VPS4B-201ENST00000238497 COL14A1Q05707 1796 aaKnown RBP11.51□□□□□ -0.57
VPS4B-201ENST00000238497 CCDC125Q86Z20 511 aa11.51□□□□□ -0.57
VPS4B-201ENST00000238497 CAMTA1Q9Y6Y1 1673 aa11.51□□□□□ -0.57
VPS4B-201ENST00000238497 EN1Q05925 392 aaPredicted RBP11.5□□□□□ -0.57
VPS4B-201ENST00000238497 RRS1Q15050 365 aaKnown RBP11.5□□□□□ -0.57
VPS4B-201ENST00000238497 KNSTRNQ9Y448 316 aa11.5□□□□□ -0.57
VPS4B-201ENST00000238497 AATKQ6ZMQ8 1374 aa11.5□□□□□ -0.57
VPS4B-201ENST00000238497 FAM196AQ6ZSG2 479 aa11.5□□□□□ -0.57
VPS4B-201ENST00000238497 ABCA3Q99758 1704 aa11.5□□□□□ -0.57
VPS4B-201ENST00000238497 EDC4Q6P2E9 1401 aaKnown RBP11.49□□□□□ -0.57
VPS4B-201ENST00000238497 KAT6BQ8WYB5 2073 aa11.49□□□□□ -0.57
VPS4B-201ENST00000238497 APBA3O96018 575 aa11.49□□□□□ -0.57
VPS4B-201ENST00000238497 ANKRD24Q8TF21 1146 aa11.49□□□□□ -0.57
VPS4B-201ENST00000238497 PUS7Q96PZ0 661 aaKnown RBP11.49□□□□□ -0.57
VPS4B-201ENST00000238497 WDR17Q8IZU2 1322 aa11.49□□□□□ -0.57
VPS4B-201ENST00000238497 TSHZ2Q9NRE2 1034 aa11.49□□□□□ -0.57
VPS4B-201ENST00000238497 EXOC5O00471 708 aa11.48□□□□□ -0.57
VPS4B-201ENST00000238497 BARGINQ6ZT62 677 aa11.48□□□□□ -0.57
VPS4B-201ENST00000238497 BLMP54132 1417 aaPredicted RBP11.48□□□□□ -0.57
VPS4B-201ENST00000238497 PSDA5PKW4 1024 aaPredicted RBP11.47□□□□□ -0.57
VPS4B-201ENST00000238497 CRB1P82279 1406 aa11.47□□□□□ -0.57
VPS4B-201ENST00000238497 NWD2Q9ULI1 1742 aa11.47□□□□□ -0.57
VPS4B-201ENST00000238497 THRAP3Q9Y2W1 955 aaKnown RBP11.47□□□□□ -0.57
VPS4B-201ENST00000238497 COL5A2P05997 1499 aaPredicted RBP11.47□□□□□ -0.57
VPS4B-201ENST00000238497 FYB1O15117 783 aa11.47□□□□□ -0.57
VPS4B-201ENST00000238497 PHRF1Q9P1Y6 1649 aaKnown RBP11.47□□□□□ -0.57
VPS4B-201ENST00000238497 ANKRD36BQ8N2N9 1353 aa11.47□□□□□ -0.57
VPS4B-201ENST00000238497 NINLQ9Y2I6 1382 aa11.47□□□□□ -0.57
VPS4B-201ENST00000238497 NRKQ7Z2Y5 1582 aa11.47□□□□□ -0.57
VPS4B-201ENST00000238497 CD163L1Q9NR16 1453 aa11.46□□□□□ -0.58
VPS4B-201ENST00000238497 DDX54Q8TDD1 881 aaKnown RBP11.46□□□□□ -0.58
VPS4B-201ENST00000238497 CARD10Q9BWT7 1032 aa11.46□□□□□ -0.58
VPS4B-201ENST00000238497 MAP3K19Q56UN5 1328 aa11.46□□□□□ -0.58
VPS4B-201ENST00000238497 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.45□□□□□ -0.58
VPS4B-201ENST00000238497 PIK3C2AO00443 1686 aa11.45□□□□□ -0.58
VPS4B-201ENST00000238497 NEUROD2Q15784 382 aa11.45□□□□□ -0.58
VPS4B-201ENST00000238497 EZH2Q15910 746 aaKnown RBP11.44□□□□□ -0.58
VPS4B-201ENST00000238497 ACSBG1Q96GR2 724 aa11.44□□□□□ -0.58
VPS4B-201ENST00000238497 ERBB3P21860 1342 aa11.44□□□□□ -0.58
VPS4B-201ENST00000238497 NSD3Q9BZ95 1437 aa11.44□□□□□ -0.58
VPS4B-201ENST00000238497 USP31Q70CQ4 1352 aa11.44□□□□□ -0.58
VPS4B-201ENST00000238497 USHBP1Q8N6Y0 703 aa11.44□□□□□ -0.58
VPS4B-201ENST00000238497 IP6K1Q92551 441 aa11.44□□□□□ -0.58
VPS4B-201ENST00000238497 CARD14Q9BXL6 1004 aa11.44□□□□□ -0.58
VPS4B-201ENST00000238497 PNISRQ8TF01 805 aaKnown RBP11.43□□□□□ -0.58
VPS4B-201ENST00000238497 SYTL4Q96C24 671 aaPredicted RBP11.43□□□□□ -0.58
VPS4B-201ENST00000238497 WDR43Q15061 677 aaKnown RBP eCLIP11.43□□□□□ -0.58
VPS4B-201ENST00000238497 BRWD3Q6RI45 1802 aa11.43□□□□□ -0.58
VPS4B-201ENST00000238497 CGNL1Q0VF96 1302 aa11.43□□□□□ -0.58
VPS4B-201ENST00000238497 IL2RBP14784 551 aa11.43□□□□□ -0.58
VPS4B-201ENST00000238497 CCDC146Q8IYE0 955 aa11.43□□□□□ -0.58
VPS4B-201ENST00000238497 CDCA7Q9BWT1 371 aaPredicted RBP11.43□□□□□ -0.58
VPS4B-201ENST00000238497 HOXC9P31274 260 aa11.42□□□□□ -0.58
VPS4B-201ENST00000238497 CDCA7LQ96GN5 454 aa11.42□□□□□ -0.58
VPS4B-201ENST00000238497 SLIT3O75094 1523 aa11.42□□□□□ -0.58
VPS4B-201ENST00000238497 NRAPQ86VF7 1730 aa11.42□□□□□ -0.58
VPS4B-201ENST00000238497 MYBBP1AQ9BQG0 1328 aaKnown RBP11.42□□□□□ -0.58
VPS4B-201ENST00000238497 HSP90AB2PQ58FF8 381 aa11.42□□□□□ -0.58
VPS4B-201ENST00000238497 R3HDM1Q15032 1099 aaKnown RBP11.42□□□□□ -0.58
VPS4B-201ENST00000238497 MARCH10Q8NA82 808 aaPredicted RBP11.42□□□□□ -0.58
VPS4B-201ENST00000238497 CCDC136Q96JN2 1154 aa11.42□□□□□ -0.58
VPS4B-201ENST00000238497 EMILIN1Q9Y6C2 1016 aa11.42□□□□□ -0.58
VPS4B-201ENST00000238497 ZBED9Q6R2W3 1325 aa11.41□□□□□ -0.58
VPS4B-201ENST00000238497 RALBP1Q15311 655 aa11.41□□□□□ -0.58
VPS4B-201ENST00000238497 CRYBG1Q9Y4K1 1723 aa11.41□□□□□ -0.58
VPS4B-201ENST00000238497 AKAP12Q02952 1782 aa11.41□□□□□ -0.58
VPS4B-201ENST00000238497 PLIN1O60240 522 aa11.4□□□□□ -0.58
VPS4B-201ENST00000238497 RAPGEF4Q8WZA2 1011 aa11.4□□□□□ -0.58
VPS4B-201ENST00000238497 OVOS2A0A0J9YW53 1432 aa11.4□□□□□ -0.58
VPS4B-201ENST00000238497 OVOS2Q6IE36 1432 aa11.4□□□□□ -0.58
VPS4B-201ENST00000238497 PTF1AQ7RTS3 328 aa11.4□□□□□ -0.59
VPS4B-201ENST00000238497 BCL11BQ9C0K0 894 aaPredicted RBP11.39□□□□□ -0.59
VPS4B-201ENST00000238497 MORC1Q86VD1 984 aa11.39□□□□□ -0.59
VPS4B-201ENST00000238497 OVOS2A0A0G2JMS6 1433 aa11.38□□□□□ -0.59
VPS4B-201ENST00000238497 NFAT5O94916 1531 aa11.38□□□□□ -0.59
VPS4B-201ENST00000238497 KCNQ2O43526 872 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms