RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 TRIM35Q9UPQ4 493 aa19.42■□□□□ 0.7
CCDC47-201ENST00000225726 SOX12O15370 315 aa19.42■□□□□ 0.7
CCDC47-201ENST00000225726 RIPK4P57078 832 aa19.41■□□□□ 0.7
CCDC47-201ENST00000225726 MST1RQ04912 1400 aa19.41■□□□□ 0.7
CCDC47-201ENST00000225726 TRPM3Q9HCF6 1732 aaPredicted RBP19.41■□□□□ 0.7
CCDC47-201ENST00000225726 ATF3P18847 181 aa19.41■□□□□ 0.7
CCDC47-201ENST00000225726 MYH16Q9H6N6 1097 aa19.41■□□□□ 0.7
CCDC47-201ENST00000225726 IL16Q14005 1332 aa19.4■□□□□ 0.7
CCDC47-201ENST00000225726 HSP90AB2PQ58FF8 381 aa19.4■□□□□ 0.7
CCDC47-201ENST00000225726 NUTM2GQ5VZR2 741 aa19.4■□□□□ 0.7
CCDC47-201ENST00000225726 NFE2L2Q16236 605 aa19.39■□□□□ 0.7
CCDC47-201ENST00000225726 XIRP1Q702N8 1843 aaKnown RBP19.39■□□□□ 0.69
CCDC47-201ENST00000225726 AMPHP49418 695 aa19.39■□□□□ 0.69
CCDC47-201ENST00000225726 ARHGEF10O15013 1369 aa19.39■□□□□ 0.69
CCDC47-201ENST00000225726 NFAT5O94916 1531 aa19.38■□□□□ 0.69
CCDC47-201ENST00000225726 PHACTR3Q96KR7 559 aa19.38■□□□□ 0.69
CCDC47-201ENST00000225726 RTL1A6NKG5 1358 aa19.38■□□□□ 0.69
CCDC47-201ENST00000225726 LTN1O94822 1766 aa19.37■□□□□ 0.69
CCDC47-201ENST00000225726 FOXO3O43524 673 aa19.37■□□□□ 0.69
CCDC47-201ENST00000225726 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.37■□□□□ 0.69
CCDC47-201ENST00000225726 MSH6P52701 1360 aa19.36■□□□□ 0.69
CCDC47-201ENST00000225726 CADPS2Q86UW7 1296 aa19.36■□□□□ 0.69
CCDC47-201ENST00000225726 PLIN1O60240 522 aa19.35■□□□□ 0.69
CCDC47-201ENST00000225726 SLIT3O75094 1523 aa19.35■□□□□ 0.69
CCDC47-201ENST00000225726 DLG5Q8TDM6 1919 aa19.34■□□□□ 0.69
CCDC47-201ENST00000225726 HOXC9P31274 260 aa19.34■□□□□ 0.69
CCDC47-201ENST00000225726 SULT6B1Q6IMI4 303 aa19.34■□□□□ 0.69
CCDC47-201ENST00000225726 PHRF1Q9P1Y6 1649 aaKnown RBP19.34■□□□□ 0.69
CCDC47-201ENST00000225726 KRT28Q7Z3Y7 464 aa19.34■□□□□ 0.69
CCDC47-201ENST00000225726 KCNH5Q8NCM2 988 aa19.34■□□□□ 0.69
CCDC47-201ENST00000225726 LMOD3Q0VAK6 560 aa19.33■□□□□ 0.68
CCDC47-201ENST00000225726 ALS2Q96Q42 1657 aa19.33■□□□□ 0.68
CCDC47-201ENST00000225726 FANCIQ9NVI1 1328 aa19.33■□□□□ 0.68
CCDC47-201ENST00000225726 AEBP1Q8IUX7 1158 aa19.33■□□□□ 0.68
CCDC47-201ENST00000225726 EXOC6Q8TAG9 804 aa19.32■□□□□ 0.68
CCDC47-201ENST00000225726 CALD1Q05682 793 aaKnown RBP19.32■□□□□ 0.68
CCDC47-201ENST00000225726 B4GALNT3Q6L9W6 998 aa19.32■□□□□ 0.68
CCDC47-201ENST00000225726 CT47B1P0C2W7 299 aaPredicted RBP19.31■□□□□ 0.68
CCDC47-201ENST00000225726 XPCQ01831 940 aaPredicted RBP19.31■□□□□ 0.68
CCDC47-201ENST00000225726 ANP32EQ9BTT0 268 aa19.31■□□□□ 0.68
CCDC47-201ENST00000225726 IGSF1Q8N6C5 1336 aa19.31■□□□□ 0.68
CCDC47-201ENST00000225726 KDRP35968 1356 aa19.31■□□□□ 0.68
CCDC47-201ENST00000225726 USP19O94966 1318 aa19.3■□□□□ 0.68
CCDC47-201ENST00000225726 BCAR3O75815 825 aa19.29■□□□□ 0.68
CCDC47-201ENST00000225726 IP6K1Q92551 441 aa19.28■□□□□ 0.68
CCDC47-201ENST00000225726 TSR2Q969E8 191 aaKnown RBP19.28■□□□□ 0.68
CCDC47-201ENST00000225726 EYA1Q99502 592 aa19.28■□□□□ 0.68
CCDC47-201ENST00000225726 ZNF335Q9H4Z2 1342 aaPredicted RBP19.28■□□□□ 0.68
CCDC47-201ENST00000225726 RARSP54136 660 aaKnown RBP19.28■□□□□ 0.68
CCDC47-201ENST00000225726 CCDC136Q96JN2 1154 aa19.28■□□□□ 0.68
CCDC47-201ENST00000225726 CRBNQ96SW2 442 aa19.28■□□□□ 0.68
CCDC47-201ENST00000225726 C20orf194Q5TEA3 1177 aa19.27■□□□□ 0.67
CCDC47-201ENST00000225726 NPHP3Q7Z494 1330 aa19.26■□□□□ 0.67
CCDC47-201ENST00000225726 GCP02774 474 aa19.26■□□□□ 0.67
CCDC47-201ENST00000225726 EXOSC9Q06265 439 aaKnown RBP19.25■□□□□ 0.67
CCDC47-201ENST00000225726 IFT57Q9NWB7 429 aa19.25■□□□□ 0.67
CCDC47-201ENST00000225726 LMOD2Q6P5Q4 547 aa19.25■□□□□ 0.67
CCDC47-201ENST00000225726 PXDNQ92626 1479 aa19.24■□□□□ 0.67
CCDC47-201ENST00000225726 GNAI1P63096 354 aa19.24■□□□□ 0.67
CCDC47-201ENST00000225726 ARHGEF25Q86VW2 580 aa19.23■□□□□ 0.67
CCDC47-201ENST00000225726 MED1Q15648 1581 aaPredicted RBP19.23■□□□□ 0.67
CCDC47-201ENST00000225726 ZNF853P0CG23 659 aa19.23■□□□□ 0.67
CCDC47-201ENST00000225726 THUMPD2Q9BTF0 503 aaKnown RBP19.23■□□□□ 0.67
CCDC47-201ENST00000225726 TNS3Q68CZ2 1445 aa19.22■□□□□ 0.67
CCDC47-201ENST00000225726 PDE3AQ14432 1141 aa19.21■□□□□ 0.67
CCDC47-201ENST00000225726 LTV1Q96GA3 475 aaPredicted RBP19.21■□□□□ 0.67
CCDC47-201ENST00000225726 CANXP27824 592 aaKnown RBP19.2■□□□□ 0.66
CCDC47-201ENST00000225726 LAS1LQ9Y4W2 734 aaKnown RBP19.2■□□□□ 0.66
CCDC47-201ENST00000225726 DDX17Q92841 729 aaKnown RBP19.2■□□□□ 0.66
CCDC47-201ENST00000225726 CFAP44Q96MT7 982 aa19.2■□□□□ 0.66
CCDC47-201ENST00000225726 FAM83GA6ND36 823 aa19.2■□□□□ 0.66
CCDC47-201ENST00000225726 GAS2L2Q8NHY3 880 aa19.2■□□□□ 0.66
CCDC47-201ENST00000225726 BRINP3Q76B58 766 aa19.19■□□□□ 0.66
CCDC47-201ENST00000225726 ZBTB7CA1YPR0 619 aa19.19■□□□□ 0.66
CCDC47-201ENST00000225726 MTHFSDQ2M296 383 aaKnown RBP19.19■□□□□ 0.66
CCDC47-201ENST00000225726 CRYBG1Q9Y4K1 1723 aa19.18■□□□□ 0.66
CCDC47-201ENST00000225726 DCTN1Q14203 1278 aa19.17■□□□□ 0.66
CCDC47-201ENST00000225726 MBIPQ9NS73 344 aa19.17■□□□□ 0.66
CCDC47-201ENST00000225726 SPATA31A3Q5VYP0 1347 aa19.17■□□□□ 0.66
CCDC47-201ENST00000225726 ZNF428Q96B54 188 aa19.17■□□□□ 0.66
CCDC47-201ENST00000225726 SLAIN2Q9P270 581 aa19.17■□□□□ 0.66
CCDC47-201ENST00000225726 CAMTA1Q9Y6Y1 1673 aa19.17■□□□□ 0.66
CCDC47-201ENST00000225726 RGPD2P0DJD1 1756 aa19.17■□□□□ 0.66
CCDC47-201ENST00000225726 FRAT1Q92837 279 aaPredicted RBP19.17■□□□□ 0.66
CCDC47-201ENST00000225726 BCL2L13Q9BXK5 485 aa19.16■□□□□ 0.66
CCDC47-201ENST00000225726 HTATSF1O43719 755 aaKnown RBP19.16■□□□□ 0.66
CCDC47-201ENST00000225726 NCAPD2Q15021 1401 aa19.16■□□□□ 0.66
CCDC47-201ENST00000225726 ALDH1L2Q3SY69 923 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 SMC4Q9NTJ3 1288 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 ABCC6O95255 1503 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 LRRC37A3O60309 1634 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 CRB1P82279 1406 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 PLEKHG5O94827 1062 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 NBPF6Q5VWK0 638 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 MCM10Q7L590 875 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 NBPF4Q96M43 638 aa19.15■□□□□ 0.66
CCDC47-201ENST00000225726 SSH1Q8WYL5 1049 aa19.14■□□□□ 0.65
CCDC47-201ENST00000225726 RTF1Q92541 710 aaKnown RBP19.14■□□□□ 0.65
CCDC47-201ENST00000225726 USHBP1Q8N6Y0 703 aa19.13■□□□□ 0.65
CCDC47-201ENST00000225726 RGPD5Q99666 1765 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 153.2 ms