RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 DUS3LQ96G46 650 aaKnown RBP20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 ZFP42Q96MM3 310 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 OSBPL11Q9BXB4 747 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 SPAG4Q9NPE6 437 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 TIMMDC1Q9NPL8 285 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 CDH9Q9ULB4 789 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 GMEB1Q9Y692 573 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 MATN3O15232 486 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 IPO13O94829 963 aaKnown RBP20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 HPCAP84074 193 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 GALNT1Q10472 559 aaPredicted RBP20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 AGAP9Q5VTM2 703 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 KLC3Q6P597 504 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 ZNF419Q96HQ0 510 aaPredicted RBP20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 TINF2Q9BSI4 451 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 HAUS8Q9BT25 410 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 CHST12Q9NRB3 414 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 SLC38A7Q9NVC3 462 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 UTRNP46939 3433 aa20.28■□□□□ 0.84
SYNGAP1-227ENST00000638142 NEMP2A6NFY4 417 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 MAFKO60675 156 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 CRYBB1P53674 252 aaPredicted RBP20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 CSHL1Q14406 222 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 MYBPC3Q14896 1274 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 TWF2Q6IBS0 349 aaKnown RBP20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 LZTR1Q8N653 840 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 DNAJC1Q96KC8 554 aaKnown RBP20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 FSD1LQ9BXM9 530 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 TRPV6Q9H1D0 765 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 CSNK1G1Q9HCP0 422 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 ARHGEF38Q9NXL2 777 aa20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 COL4A4P53420 1690 aaPredicted RBP20.27■□□□□ 0.84
SYNGAP1-227ENST00000638142 A8MT66 165 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 FBP2O00757 339 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 HNRNPRO43390 633 aaKnown RBP20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 AGKQ53H12 422 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 BTBD8Q5XKL5 378 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 NEPROQ6NW34 567 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 CUZD1Q86UP6 607 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 DQX1Q8TE96 717 aaKnown RBP20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 SLC25A23Q9BV35 468 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 PCDHAC1Q9H158 963 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 COQ10BQ9H8M1 238 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 LMCD1Q9NZU5 365 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 FIS1Q9Y3D6 152 aa20.27■□□□□ 0.83
SYNGAP1-227ENST00000638142 TCRBV3S1A0A5B6 114 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 DYNC1LI2O43237 492 aaPredicted RBP20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 SNRPB2P08579 225 aaKnown RBP20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 SLC7A1P30825 629 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 HTR7P34969 479 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 C1QTNF8P60827 252 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 IKBKEQ14164 716 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 MFSD10Q14728 455 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 LPGAT1Q92604 370 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 UHRF1Q96T88 793 aaPredicted RBP20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 MYOCOSA0A1B0GUC4 107 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 C7orf72A4D263 438 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 FGF10O15520 208 aaPredicted RBP20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 TRPA1O75762 1119 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 RBP1P09455 135 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 HOXC13P31276 330 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 NRF1Q16656 503 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 IRAK1BP1Q5VVH5 260 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 FAM45BPQ6NSW5 357 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 PAOXQ6QHF9 649 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 HACD2Q6Y1H2 254 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 GABPB2Q8TAK5 448 aaPredicted RBP20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 FAM45AQ8TCE6 357 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 CALML6Q8TD86 181 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 LRTOMTQ8WZ04 291 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 EFHD1Q9BUP0 239 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 TRIM62Q9BVG3 475 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 CCDC167Q9P0B6 97 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 CD300AQ9UGN4 299 aa20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 TIMM13Q9Y5L4 95 aaPredicted RBP20.26■□□□□ 0.83
SYNGAP1-227ENST00000638142 ARHGEF37A1IGU5 675 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 PRORSD1PA6NEY8 169 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 GPC4O75487 556 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 LTA4HP09960 611 aaKnown RBP20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 CLCN5P51795 746 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 GRB14Q14449 540 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 SAMD4BQ5PRF9 694 aaKnown RBP20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 RANBP10Q6VN20 620 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 AMIGO2Q86SJ2 522 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 SLC22A9Q8IVM8 553 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 SCML4Q8N228 414 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 PBXIP1Q96AQ6 731 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 SIK2Q9H0K1 926 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 CATSPERBQ9H7T0 1116 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 CYP4F12Q9HCS2 524 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 CACNG4Q9UBN1 327 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 IPO11Q9UI26 975 aaKnown RBP20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 RNF11Q9Y3C5 154 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 TREHO43280 583 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 PMPCBO75439 489 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 IGLV3-25P01717 112 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 KCNA5P22460 613 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 PCSK1P29120 753 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 SEPT6Q14141 434 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 RBM20Q5T481 1227 aaKnown RBP20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms