RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TTC24A2A3L6 582 aaPredicted RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3FA6NER0 549 aaPredicted RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 C16orf96A6NNT2 1141 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 USP27XA6NNY8 438 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3LB9A6J9 549 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 GJB3O75712 270 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 KRT37O76014 449 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 FSBPO95073 299 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 HLA-DQB2P05538 268 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3HP0C7X1 549 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 ADRB3P13945 408 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 ENGP17813 658 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 EIF3EP60228 445 aaKnown RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 IFI35P80217 286 aaPredicted RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 PRKD1Q15139 912 aaPredicted RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3GQ6DHY5 549 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3CQ6IPX1 549 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 PARS2Q7L3T8 475 aaKnown RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 CAMK1DQ8IU85 385 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 RGL4Q8IZJ4 473 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3Q8IZP1 549 aaPredicted RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 CADM4Q8NFZ8 388 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 ZNF641Q96N77 438 aaPredicted RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 QKIQ96PU8 341 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLN3-239ENST00000628023 SEMA3CQ99985 751 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 CEP41Q9BYV8 373 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 PCED1AQ9H1Q7 454 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 CARD9Q9H257 536 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 SUV39H2Q9H5I1 410 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 C6orf106Q9H6K1 298 aaPredicted RBP18.27■□□□□ 0.52
CLN3-239ENST00000628023 AMACRQ9UHK6 382 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 ATXN2Q99700 1313 aaKnown RBP18.26■□□□□ 0.51
CLN3-239ENST00000628023 HACD1B0YJ81 288 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 GIPC1O14908 333 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 MTSS1O43312 755 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 PLRG1O43660 514 aaKnown RBP18.26■□□□□ 0.51
CLN3-239ENST00000628023 SERPINF2P08697 491 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 ZBTB17Q13105 803 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 XRCC4Q13426 336 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 SLC45A4Q5BKX6 768 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 RALGPS1Q5JS13 557 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 WDR45BQ5MNZ6 344 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 PEAR1Q5VY43 1037 aaPredicted RBP18.26■□□□□ 0.51
CLN3-239ENST00000628023 KIAA0895LQ68EN5 471 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 SLC41A1Q8IVJ1 513 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 CDKL3Q8IVW4 592 aaPredicted RBP18.26■□□□□ 0.51
CLN3-239ENST00000628023 SLC35F6Q8N357 371 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 TTC13Q8NBP0 860 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 PDCD6IPQ8WUM4 868 aaKnown RBP18.26■□□□□ 0.51
CLN3-239ENST00000628023 ZNF419Q96HQ0 510 aaPredicted RBP18.26■□□□□ 0.51
CLN3-239ENST00000628023 AGAP3Q96P47 875 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 FAM118BQ9BPY3 351 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 TLR10Q9BXR5 811 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 NOD2Q9HC29 1040 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 PREBQ9HCU5 417 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 JRKLQ9Y4A0 524 aa18.26■□□□□ 0.51
CLN3-239ENST00000628023 KMT2BQ9UMN6 2715 aaPredicted RBP18.26■□□□□ 0.51
CLN3-239ENST00000628023 NEMP1O14524 444 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 ENC1O14682 589 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 PCDH8O95206 1070 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 CR2P20023 1033 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 DSC2Q02487 901 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 BRAT1Q6PJG6 821 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 TTC7BQ86TV6 843 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 HTR3CQ8WXA8 447 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 RAB7BQ96AH8 199 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 FAM131CQ96AQ9 280 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 GTPBP2Q9BX10 602 aaKnown RBP18.25■□□□□ 0.51
CLN3-239ENST00000628023 MIR1-1HGQ9H1L0 117 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 KDM4CQ9H3R0 1056 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 KLHL8Q9P2G9 620 aaPredicted RBP18.25■□□□□ 0.51
CLN3-239ENST00000628023 DKK3Q9UBP4 350 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 SUSD2Q9UGT4 822 aa18.25■□□□□ 0.51
CLN3-239ENST00000628023 CEP192Q8TEP8 1941 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 METTL12A8MUP2 240 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 SOCS5O75159 536 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 STK10O94804 968 aaKnown RBP18.24■□□□□ 0.51
CLN3-239ENST00000628023 SYPP08247 313 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 RBP3P10745 1247 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 CES1P23141 567 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 PTPN3P26045 913 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 CXCR5P32302 372 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 FOXC1Q12948 553 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 LRRC73Q5JTD7 316 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 DARS2Q6PI48 645 aaKnown RBP18.24■□□□□ 0.51
CLN3-239ENST00000628023 ADAT2Q7Z6V5 191 aaKnown RBP18.24■□□□□ 0.51
CLN3-239ENST00000628023 IL12RB2Q99665 862 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 ATP8A1Q9Y2Q0 1164 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.24■□□□□ 0.51
CLN3-239ENST00000628023 PCDHGC4Q9Y5F7 938 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 CEP295Q9C0D2 2601 aa18.24■□□□□ 0.51
CLN3-239ENST00000628023 ASCC3Q8N3C0 2202 aaKnown RBP18.23■□□□□ 0.51
CLN3-239ENST00000628023 UPK3BL1B0FP48 263 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 UPK3BL2E5RIL1 263 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 CEP104O60308 925 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 OPHN1O60890 802 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 GNSP15586 552 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 CA4P22748 312 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 ABL2P42684 1182 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 TAS2R38P59533 333 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms