RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SPPL2BQ8TCT7 592 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 STYXQ8WUJ0 223 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 ADI1Q9BV57 179 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 CDHR5Q9HBB8 845 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 PIGVQ9NUD9 493 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 SLC38A7Q9NVC3 462 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 SETD4Q9NVD3 440 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 OAZ3Q9UMX2 235 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 CCL22O00626 93 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 CLOCKO15516 846 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 STMN1P16949 149 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 AKAP5P24588 427 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 SLC7A1P30825 629 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 CLCN2P51788 898 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 ITGADQ13349 1161 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 PKDCCQ504Y2 493 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 C6orf10Q5SRN2 563 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 ARHGAP17Q68EM7 881 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 SLC26A9Q7LBE3 791 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 LDB1Q86U70 411 aaPredicted RBP18.48■□□□□ 0.55
UPF1-210ENST00000600689 SHCBP1Q8NEM2 672 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 MAGEE2Q8TD90 523 aaPredicted RBP18.48■□□□□ 0.55
UPF1-210ENST00000600689 NCKIPSDQ9NZQ3 722 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 VTI1BQ9UEU0 232 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 MID2Q9UJV3 735 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 VPS28Q9UK41 221 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 SLC26A2P50443 739 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 TPI1P60174 286 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 TGFBIQ15582 683 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 VPS26BQ4G0F5 336 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 NOMO2Q5JPE7 1267 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 OTUD3Q5T2D3 398 aaPredicted RBP18.48■□□□□ 0.55
UPF1-210ENST00000600689 TMEM126BQ8IUX1 230 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 DDHD1Q8NEL9 900 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 PRMT7Q9NVM4 692 aaPredicted RBP18.48■□□□□ 0.55
UPF1-210ENST00000600689 H3BMQ9 156 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 BEST1O76090 585 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 FUCA1P04066 466 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 SNRPB2P08579 225 aaKnown RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 HMOX2P30519 316 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 OXTRP30559 389 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 LRP8Q14114 963 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 RAB39AQ14964 217 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 RBM20Q5T481 1227 aaKnown RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 LYSMD3Q7Z3D4 306 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 SNX29P2Q8IUI4 249 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 IRGQQ8WZA9 623 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 PLEKHA8Q96JA3 519 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 COG8Q96MW5 612 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 EIF2B3Q9NR50 452 aaKnown RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 IGSF9Q9P2J2 1179 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 SUCOQ9UBS9 1254 aaKnown RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 PADI4Q9UM07 663 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 H2AFYO75367 372 aaKnown RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 TKTP29401 623 aaKnown RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 CXCR3P49682 368 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 KPNA1P52294 538 aaPredicted RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 FAM83EQ2M2I3 478 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 ZNF470Q6ECI4 717 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 ZC3H7AQ8IWR0 971 aaKnown RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 EXOC8Q8IYI6 725 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 SLC10A4Q96EP9 437 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 TCF12Q99081 682 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 SEPHS2Q99611 448 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 IL22Q9GZX6 179 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 CACNG4Q9UBN1 327 aa18.47■□□□□ 0.55
UPF1-210ENST00000600689 RBMX2Q9Y388 322 aaKnown RBP18.47■□□□□ 0.55
UPF1-210ENST00000600689 ASB14A6NK59 587 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 EI24O14681 340 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 NRP2O60462 931 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 PMPCBO75439 489 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 MAP4P27816 1152 aaKnown RBP18.46■□□□□ 0.55
UPF1-210ENST00000600689 RELAQ04206 551 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 BST2Q10589 180 aaKnown RBP18.46■□□□□ 0.55
UPF1-210ENST00000600689 ZBED5Q49AG3 693 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 NANOGP8Q6NSW7 305 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 KCTD8Q6ZWB6 473 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 CENPSQ8N2Z9 138 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 BPIFB6Q8NFQ5 453 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 TFAP2CQ92754 450 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 GFM2Q969S9 779 aaKnown RBP18.46■□□□□ 0.55
UPF1-210ENST00000600689 GPR22Q99680 433 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 SYT17Q9BSW7 474 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 ASB7Q9H672 318 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 RPF2Q9H7B2 306 aaKnown RBP18.46■□□□□ 0.55
UPF1-210ENST00000600689 CORINQ9Y5Q5 1042 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 TRPC5OSA6NMA1 111 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 DFFAO00273 331 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 INPP4BO15327 924 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 SUPT7LO94864 414 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 C8BP07358 591 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 GRM5P41594 1212 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 MATKP42679 507 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 CD97P48960 835 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 GLUD2P49448 558 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 PCSK7Q16549 785 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 ZNF789Q5FWF6 425 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 EPHX4Q8IUS5 362 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 GPRC5AQ8NFJ5 357 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 EDEM1Q92611 657 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms