RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 UPK3BL1B0FP48 263 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 UPK3BL2E5RIL1 263 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 NEMP1O14524 444 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 TRAFD1O14545 582 aaPredicted RBP15.35■□□□□ 0.05
LIG1-219ENST00000600055 SLC30A4O14863 429 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 JCHAINP01591 159 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 HLA-DQB2P05538 268 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 SYPP08247 313 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 XPAP23025 273 aaPredicted RBP15.35■□□□□ 0.05
LIG1-219ENST00000600055 GRIA4P48058 902 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 LIMK1P53667 647 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 ATXN3P54252 364 aaPredicted RBP15.35■□□□□ 0.05
LIG1-219ENST00000600055 DSC2Q02487 901 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 ITKQ08881 620 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 AP1B1Q10567 949 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 ZBTB17Q13105 803 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 TFDP2Q14188 446 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 IHHQ14623 411 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 PDK1Q15118 436 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 TEAD4Q15561 434 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 UGP2Q16851 508 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 KIF19Q2TAC6 998 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 UAP1L1Q3KQV9 507 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 SETMARQ53H47 684 aaPredicted RBP15.35■□□□□ 0.05
LIG1-219ENST00000600055 CFAP58Q5T655 872 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 NAPEPLDQ6IQ20 393 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 PEX26Q7Z412 305 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 ADAT2Q7Z6V5 191 aaKnown RBP15.35■□□□□ 0.05
LIG1-219ENST00000600055 HCAR2Q8TDS4 363 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 FATE1Q969F0 183 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 ECHDC3Q96DC8 303 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 SEMA3CQ99985 751 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 CEP41Q9BYV8 373 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 TSGA10Q9BZW7 698 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 IL21RQ9HBE5 538 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 PCDH12Q9NPG4 1184 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 DLL3Q9NYJ7 618 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 TPX2Q9ULW0 747 aaKnown RBP15.35■□□□□ 0.05
LIG1-219ENST00000600055 ANKRD6Q9Y2G4 727 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 TTLL3Q9Y4R7 772 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 SNX11Q9Y5W9 270 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 PCDH15Q96QU1 1955 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 KCNK3O14649 394 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 DDX3YO15523 660 aaKnown RBP15.34■□□□□ 0.05
LIG1-219ENST00000600055 TSPAN6O43657 245 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 MMP20O60882 483 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 PAK4O96013 591 aaPredicted RBP15.34■□□□□ 0.05
LIG1-219ENST00000600055 PYGMP11217 842 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 TGM2P21980 687 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 CD38P28907 300 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 ID4P47928 161 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 RWDD2BP57060 319 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 RPS21P63220 83 aaKnown RBP15.34■□□□□ 0.05
LIG1-219ENST00000600055 NIPAL4Q0D2K0 466 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 TRAF2Q12933 501 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 ZNF211Q13398 564 aaPredicted RBP15.34■□□□□ 0.05
LIG1-219ENST00000600055 PPP2R5EQ16537 467 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 KIAA1161Q6NSJ0 714 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 BRAT1Q6PJG6 821 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 SYCE1Q8N0S2 351 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 RNF10Q8N5U6 811 aaKnown RBP15.34■□□□□ 0.05
LIG1-219ENST00000600055 PAF1Q8N7H5 531 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 PDCD6IPQ8WUM4 868 aaKnown RBP15.34■□□□□ 0.05
LIG1-219ENST00000600055 WRAP53Q9BUR4 548 aaKnown RBP15.34■□□□□ 0.05
LIG1-219ENST00000600055 SLC17A9Q9BYT1 436 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 POLR1EQ9GZS1 481 aaKnown RBP15.34■□□□□ 0.05
LIG1-219ENST00000600055 SEPT10Q9P0V9 454 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 DMTF1Q9Y222 760 aa15.34■□□□□ 0.05
LIG1-219ENST00000600055 PLXNA2O75051 1894 aa15.33■□□□□ 0.05
LIG1-219ENST00000600055 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.33■□□□□ 0.04
LIG1-219ENST00000600055 DCDC2BA2VCK2 349 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 PRAMEF26H0Y7S4 382 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 RIOK3O14730 519 aaKnown RBP15.33■□□□□ 0.04
LIG1-219ENST00000600055 PPP1R12AO14974 1030 aaPredicted RBP15.33■□□□□ 0.04
LIG1-219ENST00000600055 VILLO15195 856 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 RAD51BO15315 384 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 HTRA2O43464 458 aaPredicted RBP15.33■□□□□ 0.04
LIG1-219ENST00000600055 KRT86O43790 486 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 NEBLO76041 1014 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 CCDC175P0C221 793 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 NUDT1P36639 197 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 NR2C2P49116 596 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 C21orf59P57076 290 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 CLDN2P57739 230 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 COPS2P61201 443 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 HLA-BQ31612 363 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 TMEM52BQ4KMG9 183 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 PRAMEF14Q5SWL7 426 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 BBS12Q6ZW61 710 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 ZC3H18Q86VM9 953 aaKnown RBP15.33■□□□□ 0.04
LIG1-219ENST00000600055 CNTD1Q8N815 330 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 TMEM145Q8NBT3 493 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 ARRDC2Q8TBH0 407 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 CXorf40AQ8TE69 158 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 P3H4Q92791 437 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 IL12RB2Q99665 862 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 C1QTNF2Q9BXJ5 285 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 ZDHHC5Q9C0B5 715 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 GAREM1Q9H706 876 aa15.33■□□□□ 0.04
LIG1-219ENST00000600055 LZTFL1Q9NQ48 299 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms