RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, human

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-205	ENST00000598209	MATN3	O15232	486 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	ITIH2	P19823	946 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	HNRNPA2B1	P22626	353 aa	Known RBP	13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	AKT2	P31751	481 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	SUOX	P51687	545 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	DYNLT1	P63172	113 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	ELP6	Q0PNE2	266 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	KIF5A	Q12840	1032 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	FGL2	Q14314	439 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	TAZ	Q16635	292 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	UGP2	Q16851	508 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	NPNT	Q6UXI9	565 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	SPOCD1	Q6ZMY3	1216 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	ZSWIM9	Q86XI8	627 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	CCDC13	Q8IYE1	715 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	PAF1	Q8N7H5	531 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	MFSD2A	Q8NA29	543 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	TMEM145	Q8NBT3	493 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	CCNY	Q8ND76	341 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	KRT35	Q92764	455 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	FATE1	Q969F0	183 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	ECHDC3	Q96DC8	303 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	SLC17A9	Q9BYT1	436 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	TRIM10	Q9UDY6	481 aa		13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	CNOT1	A5YKK6	2376 aa	Known RBP	13.98	□□□□□ -0.17
UPF1-205	ENST00000598209	MACROD2	A1Z1Q3	448 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	GRID2IP	A4D2P6	1211 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	TLR4	O00206	839 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	TRAFD1	O14545	582 aa	Predicted RBP	13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	KCNK3	O14649	394 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	NEBL	O76041	1014 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	PAK4	O96013	591 aa	Predicted RBP	13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	ZNF883	P0CG24	379 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	KRT10	P13645	584 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	CCNB1	P14635	433 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	KCNA4	P22459	653 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	CTNNA1	P35221	906 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	PPID	Q08752	370 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	ITK	Q08881	620 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	SGCG	Q13326	291 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	SLC14A1	Q13336	389 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	TFDP2	Q14188	446 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	LLGL1	Q15334	1064 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	TMEM52B	Q4KMG9	183 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	TFDP3	Q5H9I0	405 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	RALGPS1	Q5JS13	557 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	KAZN	Q674X7	775 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	ERMP1	Q7Z2K6	904 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	IQCH	Q86VS3	1027 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	CCDC50	Q8IVM0	306 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	RCOR2	Q8IZ40	523 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	LRRC57	Q8N9N7	239 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	EXD1	Q8NHP7	514 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	KIAA1524	Q8TCG1	905 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	CXorf40A	Q8TE69	158 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	RBM41	Q96IZ5	413 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	LGMN	Q99538	433 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	WRAP53	Q9BUR4	548 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	C1QTNF2	Q9BXJ5	285 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	GRPEL1	Q9HAV7	217 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	NOD2	Q9HC29	1040 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	PCDH12	Q9NPG4	1184 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	RBM22	Q9NW64	420 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	ATP8A1	Q9Y2Q0	1164 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	PCDHGC4	Q9Y5F7	938 aa		13.97	□□□□□ -0.17
UPF1-205	ENST00000598209	hCG_1818297	A0A087WSY0	165 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209		H0Y8X5	98 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	RIOK3	O14730	519 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	PPP1R12A	O14974	1030 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	RAD51B	O15315	384 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	HTRA2	O43464	458 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	CST8	O60676	142 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	MAGEC1	O60732	1142 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	MMP20	O60882	483 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	SOCS5	O75159	536 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	PRKCG	P05129	697 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	CD59	P13987	128 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	CTNNA2	P26232	953 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	CLDN2	P57739	230 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	NXPH1	P58417	271 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	OVGP1	Q12889	678 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	PDK1	Q15118	436 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	ZNF423	Q2M1K9	1284 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	PPM1J	Q5JR12	505 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	ERAP2	Q6P179	960 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	GCNT7	Q6ZNI0	430 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	CCDC112	Q8NEF3	446 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	ASB12	Q8WXK4	309 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	KLHDC7B	Q96G42	594 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	OLFM3	Q96PB7	478 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	SEMA3C	Q99985	751 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	POLR1E	Q9GZS1	481 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	GDF3	Q9NR23	364 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	TM7SF3	Q9NS93	570 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	HAUS2	Q9NVX0	235 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	AMACR	Q9UHK6	382 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	TTLL3	Q9Y4R7	772 aa		13.96	□□□□□ -0.17
UPF1-205	ENST00000598209	PCDHA3	Q9Y5H8	950 aa		13.96	□□□□□ -0.17

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