RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 MCOLN2Q8IZK6 566 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 TP53I13Q8NBR0 393 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-211ENST00000597968 OR6K2Q8NGY2 324 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 FNIP1Q8TF40 1166 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 SNRNP27Q8WVK2 155 aaKnown RBP13.76□□□□□ -0.21
TRIM28-211ENST00000597968 MCEEQ96PE7 176 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 BBC3Q96PG8 261 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-211ENST00000597968 LGMNQ99538 433 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 SUV39H2Q9H5I1 410 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 PARVAQ9NVD7 372 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 UBA2Q9UBT2 640 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-211ENST00000597968 KLF15Q9UIH9 416 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 PCDHB1Q9Y5F3 818 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 ACTL7AQ9Y615 435 aa13.76□□□□□ -0.21
TRIM28-211ENST00000597968 DOCK9Q9BZ29 2069 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 ARHGAP42A6NI28 874 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 GOLGA6L22H0YM25 854 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 TMX2-CTNND1H3BSU7 103 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 ERVH48-1M5A8F1 160 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 CREB3O43889 395 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 ATP1A3P13637 1013 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 TIMP2P16035 220 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 IGFALSP35858 605 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 EIF4A3P38919 411 aaKnown RBP13.75□□□□□ -0.21
TRIM28-211ENST00000597968 TMPRSS3P57727 454 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 TPI1P60174 286 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 POLR2LP62875 67 aaKnown RBP13.75□□□□□ -0.21
TRIM28-211ENST00000597968 EIF3IQ13347 325 aaKnown RBP13.75□□□□□ -0.21
TRIM28-211ENST00000597968 LRRC14Q15048 493 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 KLHL40Q2TBA0 621 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 PRRT3Q5FWE3 981 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 ATXN7L2Q5T6C5 722 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-211ENST00000597968 EFL1Q7Z2Z2 1120 aaKnown RBP13.75□□□□□ -0.21
TRIM28-211ENST00000597968 SPOCK2Q92563 424 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 HMCESQ96FZ2 354 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 LRRC19Q9H756 370 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 PDFQ9HBH1 243 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 KCTD5Q9NXV2 234 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 GGT7Q9UJ14 662 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 SSUH2Q9Y2M2 353 aa13.75□□□□□ -0.21
TRIM28-211ENST00000597968 MYLKQ15746 1914 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 A0A1W2PQ67 120 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 PRAMEF11O60813 436 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 MMP20O60882 483 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 HOXC4P09017 264 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-211ENST00000597968 GZMAP12544 262 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 TGM2P21980 687 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 RBMS1P29558 406 aaKnown RBP13.74□□□□□ -0.21
TRIM28-211ENST00000597968 HCAR3P49019 387 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 HK3P52790 923 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 RPL7AP62424 266 aaKnown RBP13.74□□□□□ -0.21
TRIM28-211ENST00000597968 SKOR1P84550 965 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 RHDQ02161 417 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 MTM1Q13496 603 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 CYTH1Q15438 398 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 CDKN3Q16667 212 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 DEFB133Q30KQ1 61 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 CFAP58Q5T655 872 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 ERMARDQ5T6L9 678 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 FAXCQ5TGI0 409 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 GUSBP11Q6P575 273 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 APTXQ7Z2E3 356 aaKnown RBP13.74□□□□□ -0.21
TRIM28-211ENST00000597968 VPS36Q86VN1 386 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 GKN2Q86XP6 184 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 PYROXD2Q8N2H3 581 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 ARL14Q8N4G2 192 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 LZTR1Q8N653 840 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 ARL10Q8N8L6 244 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 SLC39A7Q92504 469 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 SLC46A1Q96NT5 459 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 LRRC61Q9BV99 259 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 NAT10Q9H0A0 1025 aaKnown RBP13.74□□□□□ -0.21
TRIM28-211ENST00000597968 ATP13A3Q9H7F0 1226 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 ASCL3Q9NQ33 180 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 SEPT11Q9NVA2 429 aaKnown RBP13.74□□□□□ -0.21
TRIM28-211ENST00000597968 LHX3Q9UBR4 397 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 ITM2BQ9Y287 266 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 DGKBQ9Y6T7 804 aa13.74□□□□□ -0.21
TRIM28-211ENST00000597968 CPED1A4D0V7 1026 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 YY2O15391 372 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 GCATO75600 419 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 RASGRP1O95267 797 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 GJB6O95452 261 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 MBD3O95983 291 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 MPOP05164 745 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 CTSEP14091 401 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 TSHRP16473 764 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 KELP23276 732 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 NFKBIAP25963 317 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 SERPINA4P29622 427 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 RENBPP51606 427 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 ADKP55263 362 aaKnown RBP13.73□□□□□ -0.21
TRIM28-211ENST00000597968 NFATC4Q14934 902 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 TPRG1LQ5T0D9 272 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 PLEKHA7Q6IQ23 1121 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 IRF2BP2Q7Z5L9 587 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 SLC35F3Q8IY50 421 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 WDR36Q8NI36 951 aaKnown RBP13.73□□□□□ -0.21
TRIM28-211ENST00000597968 KCNE4Q8WWG9 221 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 CRELD1Q96HD1 420 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms