RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LEPRP48357 1165 aaKnown RBP14.29□□□□□ -0.12
LIG3-205ENST00000585941 LIG3P49916 1009 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 SCNN1BP51168 640 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 PRKAA2P54646 552 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 SLC12A2P55011 1212 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 RAB10P61026 200 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 OCRLQ01968 901 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 CTBP1Q13363 440 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 TSNAXIP1Q2TAA8 658 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 C16orf46Q6P387 395 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 DENND6AQ8IWF6 608 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 HS6ST3Q8IZP7 471 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 TDRD5Q8NAT2 981 aaKnown RBP14.29□□□□□ -0.12
LIG3-205ENST00000585941 LEMD2Q8NC56 503 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 OR13J1Q8NGT2 312 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 USP13Q92995 863 aaPredicted RBP14.29□□□□□ -0.12
LIG3-205ENST00000585941 TSPAN17Q96FV3 270 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 RMDN2Q96LZ7 410 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 C2orf49Q9BVC5 232 aaPredicted RBP14.29□□□□□ -0.12
LIG3-205ENST00000585941 ADGRE3Q9BY15 652 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 TLR9Q9NR96 1032 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 TMEM216Q9P0N5 145 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.29□□□□□ -0.12
LIG3-205ENST00000585941 CFAP97Q9P2B7 532 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 CORO1CQ9ULV4 474 aaPredicted RBP14.29□□□□□ -0.12
LIG3-205ENST00000585941 ARHGAP26Q9UNA1 814 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 ACOT9Q9Y305 439 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 A0A087X1B8 175 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 FAM95CA0A1B0GW59 222 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 E2F8A0AVK6 867 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 TTC24A2A3L6 582 aaPredicted RBP14.28□□□□□ -0.12
LIG3-205ENST00000585941 DNAJC8O75937 253 aaPredicted RBP14.28□□□□□ -0.12
LIG3-205ENST00000585941 ATP5HO75947 161 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 TMCC1O94876 653 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 GSRP00390 522 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 SERPINE1P05121 402 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 ATP5BP06576 529 aaKnown RBP14.28□□□□□ -0.12
LIG3-205ENST00000585941 MYL4P12829 197 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 GLDCP23378 1020 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 HOXA9P31269 272 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 SKIV2L2P42285 1042 aaKnown RBP14.28□□□□□ -0.12
LIG3-205ENST00000585941 ARFIP2P53365 341 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 EPHA5P54756 1037 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 ERVFC1P60507 584 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 ARF5P84085 180 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 BNIP1Q12981 228 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 PCLAFQ15004 111 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 MBLAC2Q68D91 279 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 MRNIPQ6NTE8 343 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 RETSATQ6NUM9 610 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 CILP2Q8IUL8 1156 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 FITM2Q8N6M3 262 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 GPR150Q8NGU9 434 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 BLOC1S5Q8TDH9 187 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 ACDQ96AP0 544 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 CORO1BQ9BR76 489 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 TDRD1Q9BXT4 1180 aaKnown RBP14.28□□□□□ -0.12
LIG3-205ENST00000585941 FAM96AQ9H5X1 160 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 NMRAL1Q9HBL8 299 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 KCNK4Q9NYG8 393 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 GGT7Q9UJ14 662 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 ZMYM5Q9UJ78 669 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 OR51B4Q9Y5P0 310 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 ANKRD36A6QL64 1941 aa14.28□□□□□ -0.12
LIG3-205ENST00000585941 A0A1W2PRU2 124 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 H0YHG0 523 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 RPP40O75818 363 aaKnown RBP14.27□□□□□ -0.12
LIG3-205ENST00000585941 UBOX5O94941 541 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 TOP3BO95985 862 aaKnown RBP14.27□□□□□ -0.12
LIG3-205ENST00000585941 CYBBP04839 570 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 RB1P06400 928 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 DLDP09622 509 aaKnown RBP14.27□□□□□ -0.12
LIG3-205ENST00000585941 PTPN2P17706 415 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 CLCN4P51793 760 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 ZXDBP98169 803 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 MPP1Q00013 466 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 OVGP1Q12889 678 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 ARHGAP15Q53QZ3 475 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 PLPP4Q5VZY2 271 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 MFN1Q8IWA4 741 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 OR6P1Q8NGX9 317 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 SPPL3Q8TCT6 385 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 DDI1Q8WTU0 396 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 HDAC10Q969S8 669 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 CAB39LQ9H9S4 337 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 KIAA1522Q9P206 1035 aaPredicted RBP14.27□□□□□ -0.12
LIG3-205ENST00000585941 DNMT3BQ9UBC3 853 aaKnown RBP14.27□□□□□ -0.12
LIG3-205ENST00000585941 DPP7Q9UHL4 492 aa14.27□□□□□ -0.12
LIG3-205ENST00000585941 C5orf67F2Z3F1 127 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 LEFTY2O00292 366 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 GLP2RO95838 553 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 PRKCGP05129 697 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 HNRNPA1P09651 372 aaKnown RBP eCLIP14.26□□□□□ -0.13
LIG3-205ENST00000585941 SLC35E2BP0CK96 405 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 RALBP11234 206 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 FGF3P11487 239 aaPredicted RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 PSMA3P25788 255 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 MZF1P28698 734 aaPredicted RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 ABCG1P45844 678 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 MAPK8P45983 427 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms