RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	LRRC73	Q5JTD7	316 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	GCNT7	Q6ZNI0	430 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	ABI3BP	Q7Z7G0	1075 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	ZSCAN30	Q86W11	494 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	TC2N	Q8N9U0	490 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	TSEN2	Q8NCE0	465 aa	Known RBP	13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	CCDC42	Q96M95	316 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	RBSN	Q9H1K0	784 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	ERVMER34-1	Q9H9K5	563 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	GPR27	Q9NS67	375 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	LCMT1	Q9UIC8	334 aa		13.46	□□□□□ -0.25
SREBF1-223	ENST00000584760	APC2	O95996	2303 aa		13.46	□□□□□ -0.26
SREBF1-223	ENST00000584760	LRP4	O75096	1905 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	SETX	Q7Z333	2677 aa	Known RBP	13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	RAD51B	O15315	384 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	MAGEC1	O60732	1142 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	MTA2	O94776	668 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	EPHA8	P29322	1005 aa	Predicted RBP	13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	AKT2	P31751	481 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	GJC1	P36383	396 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	GRK6	P43250	576 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	SSR1	P43307	286 aa	Known RBP	13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	ABCG1	P45844	678 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	RXRG	P48443	463 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	CSNK1D	P48730	415 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	GRM3	Q14832	879 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	HADH	Q16836	314 aa	Known RBP	13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	ATP13A4	Q4VNC1	1196 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	PRAMEF14	Q5SWL7	426 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	TMCO4	Q5TGY1	634 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	DHRS13	Q6UX07	377 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	OXR1	Q8N573	874 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	SLC35G2	Q8TBE7	412 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	FAF2	Q96CS3	445 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	FEM1C	Q96JP0	617 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	ZNF599	Q96NL3	588 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	PSKH2	Q96QS6	385 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	TUBGCP5	Q96RT8	1024 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	UBL7	Q96S82	380 aa	Predicted RBP	13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	KLF6	Q99612	283 aa	Predicted RBP	13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	ZNF670	Q9BS34	389 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	CINP	Q9BW66	212 aa	Predicted RBP	13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	C1QTNF2	Q9BXJ5	285 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	SLC17A9	Q9BYT1	436 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	KLHL11	Q9NVR0	708 aa		13.45	□□□□□ -0.26
SREBF1-223	ENST00000584760	ACACA	Q13085	2346 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	IGLON5	A6NGN9	336 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	YKT6	O15498	198 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	MFSD11	O43934	449 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	BUB1B	O60566	1050 aa	Predicted RBP	13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	MAFK	O60675	156 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	PAK4	O96013	591 aa	Predicted RBP	13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	THEGL	P0DJG4	465 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	TIMP2	P16035	220 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	ITPKB	P27987	946 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	SERPINB6	P35237	376 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	ARRB1	P49407	418 aa	Predicted RBP	13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	CLDN2	P57739	230 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	SLC10A7	Q0GE19	358 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	SMAD1	Q15797	465 aa	Known RBP	13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	NCBP2-AS2	Q69YL0	99 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	KYAT3	Q6YP21	454 aa	Known RBP	13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	KANSL1	Q7Z3B3	1105 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	SRL	Q86TD4	932 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	ZSWIM9	Q86XI8	627 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	GATAD2A	Q86YP4	633 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	CAMK1D	Q8IU85	385 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	SLC22A18AS	Q8N1D0	253 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	ATPAF2	Q8N5M1	289 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	OR13H1	Q8NG92	308 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	PCDH19	Q8TAB3	1148 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	HCAR2	Q8TDS4	363 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	SAP25	Q8TEE9	199 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	ASB12	Q8WXK4	309 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	RFFL	Q8WZ73	363 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	ECHDC3	Q96DC8	303 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	KLHDC7B	Q96G42	594 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	NSMCE3	Q96MG7	304 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	ZNF641	Q96N77	438 aa	Predicted RBP	13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	SUV39H2	Q9H5I1	410 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	SEPT3	Q9UH03	358 aa		13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	URB1	O60287	2271 aa	Known RBP	13.44	□□□□□ -0.26
SREBF1-223	ENST00000584760	LOC400499	M0QZD8	3231 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	POM121B	A6NF01	834 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760		A6NNZ2	444 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	NEMP1	O14524	444 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	KRT7	P08729	469 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	ITIH2	P19823	946 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	SUOX	P51687	545 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	ZNF75D	P51815	510 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	MESD	Q14696	234 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	LBR	Q14739	615 aa	Known RBP	13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	PAFAH1B3	Q15102	231 aa	Known RBP	13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	PDK2	Q15119	407 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	TCEAL1	Q15170	157 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	UGP2	Q16851	508 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	INAVA	Q3KP66	663 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	BRAT1	Q6PJG6	821 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	TTC7B	Q86TV6	843 aa		13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms