RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 GLRA3O75311 464 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 VAPBO95292 243 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 CRTAMO95727 393 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 EPOP01588 193 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 ASGR2P07307 311 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 ITGA2BP08514 1039 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 TROVE2P10155 538 aaKnown RBP eCLIP9.37□□□□□ -0.91
SS18-220ENST00000582092 DRD4P21917 467 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 NMBRP28336 390 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 ADRA1AP35348 466 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 POLD2P49005 469 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 EPHB1P54762 984 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 HNRNPH2P55795 449 aaKnown RBP9.37□□□□□ -0.91
SS18-220ENST00000582092 TNK2Q07912 1038 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 NIPAL4Q0D2K0 466 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 SLC1A5Q15758 541 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 TAF1BQ53T94 588 aaPredicted RBP9.37□□□□□ -0.91
SS18-220ENST00000582092 TEDDM1Q5T9Z0 273 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 KDELC1Q6UW63 502 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 RANBP10Q6VN20 620 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 TPGS1Q6ZTW0 290 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 RAPH1Q70E73 1250 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 HTR3DQ70Z44 454 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 GAREM2Q75VX8 874 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 SDCCAG8Q86SQ7 713 aaPredicted RBP9.37□□□□□ -0.91
SS18-220ENST00000582092 FBXL6Q8N531 539 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 ZNF557Q8N988 423 aaPredicted RBP9.37□□□□□ -0.91
SS18-220ENST00000582092 OR6P1Q8NGX9 317 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 BHMTQ93088 406 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 MFSD3Q96ES6 412 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 SEC16BQ96JE7 1060 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 SERAC1Q96JX3 654 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 FCRL3Q96P31 734 aaPredicted RBP9.37□□□□□ -0.91
SS18-220ENST00000582092 RANBP9Q96S59 729 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 SRPK1Q96SB4 655 aaKnown RBP9.37□□□□□ -0.91
SS18-220ENST00000582092 VPS11Q9H270 941 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 TASP1Q9H6P5 420 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 MANSC1Q9H8J5 431 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 IL21Q9HBE4 155 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 C11orf16Q9NQ32 467 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 GDE1Q9NZC3 331 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 KLHL14Q9P2G3 628 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 TBC1D14Q9P2M4 693 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 GGA2Q9UJY4 613 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 DUSP12Q9UNI6 340 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 TBC1D30Q9Y2I9 924 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 NOTCH4Q99466 2003 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 C5orf42Q9H799 3197 aa9.37□□□□□ -0.91
SS18-220ENST00000582092 E2F8A0AVK6 867 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 C2orf81A6NN90 581 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 SOBPA7XYQ1 873 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 LEFTY2O00292 366 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 SLC9A3R1O14745 358 aaPredicted RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 SCAMP3O14828 347 aaKnown RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 INSIG1O15503 277 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 UGT1A9O60656 530 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 ASMTLO95671 621 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 NDST3O95803 873 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 RHOP08100 348 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 GJA1P17302 382 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 SAT1P21673 171 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 CRHR1P34998 444 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 NUMBP49757 651 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 KPNA2P52292 529 aaKnown RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 NUBP1P53384 320 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 RHOAP61586 193 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 MPP2Q14168 576 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 ZKSCAN8Q15776 578 aaPredicted RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 SMAD1Q15797 465 aaKnown RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 SLC14A2Q15849 920 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 PDK4Q16654 411 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 MPP7Q5T2T1 576 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 KYAT3Q6YP21 454 aaKnown RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 TMEM150AQ86TG1 271 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 NUDCD3Q8IVD9 361 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 KLHDC8BQ8IXV7 354 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 LMNTD2Q8IXW0 634 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 UNC5BQ8IZJ1 945 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 CMTM8Q8IZV2 173 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 CPXM2Q8N436 756 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 RYBPQ8N488 228 aaPredicted RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 BLOC1S5Q8TDH9 187 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 SH3RF2Q8TEC5 729 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 DENND1AQ8TEH3 1009 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 PDCD6IPQ8WUM4 868 aaKnown RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 ATXN7L3BQ96GX2 97 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 PRICKLE1Q96MT3 831 aaPredicted RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 ZNF317Q96PQ6 595 aaPredicted RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 FAM111AQ96PZ2 611 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 PSKH2Q96QS6 385 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 SLC22A12Q96S37 553 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 MYADMQ96S97 322 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 RBBP8Q99708 897 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 TRIM56Q9BRZ2 755 aaKnown RBP9.36□□□□□ -0.91
SS18-220ENST00000582092 FEM1AQ9BSK4 669 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 IRF2BPLQ9H1B7 796 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 UGT1A7Q9HAW7 530 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 UGT1A10Q9HAW8 530 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 UGT1A8Q9HAW9 530 aa9.36□□□□□ -0.91
SS18-220ENST00000582092 ARNT2Q9HBZ2 717 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms