RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 IL27RAQ6UWB1 636 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 LRRC49Q8IUZ0 686 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 LRRC57Q8N9N7 239 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 MFSD2AQ8NA29 543 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 HCAR2Q8TDS4 363 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 OLFM3Q96PB7 478 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 NUDCD1Q96RS6 583 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 LGMNQ99538 433 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 WRAP53Q9BUR4 548 aaKnown RBP20.3■□□□□ 0.84
SS18-218ENST00000581021 SLC17A9Q9BYT1 436 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 NT5MQ9NPB1 228 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 DDX56Q9NY93 547 aaKnown RBP20.3■□□□□ 0.84
SS18-218ENST00000581021 CABIN1Q9Y6J0 2220 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 SPEGQ15772 3267 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 GRID2IPA4D2P6 1211 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 NEMP1O14524 444 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 MATN3O15232 486 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 MMP20O60882 483 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 IPO7O95373 1038 aaKnown RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 PAK4O96013 591 aaPredicted RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 CSRP1P21291 193 aaKnown RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 KCNA4P22459 653 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 HNRNPA2B1P22626 353 aaKnown RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 SERPINA4P29622 427 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 HSPA9P38646 679 aaKnown RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 MMP12P39900 470 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 NOVA1P51513 510 aaKnown RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 RENBPP51606 427 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 DYNLT1P63172 113 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 FAM193AP78312 1265 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 TRAF2Q12933 501 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 HNRNPDQ14103 355 aaKnown RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 GRM3Q14832 879 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 IFI16Q16666 785 aaKnown RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 BRAT1Q6PJG6 821 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 SPOCD1Q6ZMY3 1216 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 B4GALNT4Q76KP1 1039 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 DAAM2Q86T65 1068 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 RFX6Q8HWS3 928 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 KATNAL2Q8IYT4 538 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 SLC22A18ASQ8N1D0 253 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 OR13H1Q8NG92 308 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 FATE1Q969F0 183 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 HDAC11Q96DB2 347 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 FEM1CQ96JP0 617 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 HERPUD2Q9BSE4 406 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 TM7SF3Q9NS93 570 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 SAE1Q9UBE0 346 aaPredicted RBP20.29■□□□□ 0.84
SS18-218ENST00000581021 PCDHGC4Q9Y5F7 938 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 HEY1Q9Y5J3 304 aa20.29■□□□□ 0.84
SS18-218ENST00000581021 POM121BA6NF01 834 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 RIOK3O14730 519 aaKnown RBP20.28■□□□□ 0.84
SS18-218ENST00000581021 APOL1O14791 398 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 HTRA2O43464 458 aaPredicted RBP20.28■□□□□ 0.84
SS18-218ENST00000581021 SH3BP5O60239 455 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 HLA-DQB2P05538 268 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 ZNF883P0CG24 379 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 PECAM1P16284 738 aaPredicted RBP20.28■□□□□ 0.84
SS18-218ENST00000581021 CCNCP24863 283 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 AKT2P31751 481 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 BCL2L1Q07817 233 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 PPIDQ08752 370 aaKnown RBP20.28■□□□□ 0.84
SS18-218ENST00000581021 RALGDSQ12967 914 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 ZBTB17Q13105 803 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 TMEM52BQ4KMG9 183 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 TPRG1LQ5T0D9 272 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 ALG1LQ6GMV1 187 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 ABI3BPQ7Z7G0 1075 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 IQCHQ86VS3 1027 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 BMFQ96LC9 184 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 SCUBE2Q9NQ36 999 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 GPR27Q9NS67 375 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 BTBD3Q9Y2F9 522 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 ATP8A1Q9Y2Q0 1164 aa20.28■□□□□ 0.84
SS18-218ENST00000581021 hCG_1818297A0A087WSY0 165 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 A0A1B0GTQ1 180 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 KCNK1O00180 336 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 MX2P20592 715 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 CTNNA1P35221 906 aaKnown RBP20.27■□□□□ 0.84
SS18-218ENST00000581021 DSC2Q02487 901 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 NIPAL4Q0D2K0 466 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 SLC14A1Q13336 389 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 STAT4Q14765 748 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 PTPRRQ15256 657 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 DBX2Q6ZNG2 339 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 KIAA1328Q86T90 577 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 NAXDQ8IW45 347 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 CCDC13Q8IYE1 715 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.27■□□□□ 0.84
SS18-218ENST00000581021 SPOCK2Q92563 424 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 ELF4Q99607 663 aaPredicted RBP20.27■□□□□ 0.84
SS18-218ENST00000581021 SEMA3CQ99985 751 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 RBM22Q9NW64 420 aaKnown RBP eCLIP20.27■□□□□ 0.84
SS18-218ENST00000581021 COQ6Q9Y2Z9 468 aa20.27■□□□□ 0.84
SS18-218ENST00000581021 LRRK1Q38SD2 2015 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 MACROD2A1Z1Q3 448 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 CBFA2T3O75081 653 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 THEGLP0DJG4 465 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 CCNB1P14635 433 aa20.26■□□□□ 0.83
SS18-218ENST00000581021 IGFALSP35858 605 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms