RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ANKRD20A8PQ5CZ79 823 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 NCBP2-AS2Q69YL0 99 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 Q6ZSR6 202 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 BBS5Q8N3I7 341 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 PAF1Q8N7H5 531 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 DENND6BQ8NEG7 585 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 PCDH19Q8TAB3 1148 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 KLF6Q99612 283 aaPredicted RBP24.12■■□□□ 1.45
SHMT1-206ENST00000579558 WRAP53Q9BUR4 548 aaKnown RBP24.12■■□□□ 1.45
SHMT1-206ENST00000579558 PCDH12Q9NPG4 1184 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 SHROOM3Q8TF72 1996 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 HYAL3O43820 417 aaPredicted RBP24.11■■□□□ 1.45
SHMT1-206ENST00000579558 TM7SF2O76062 418 aa24.11■■□□□ 1.45
SHMT1-206ENST00000579558 HSPA9P38646 679 aaKnown RBP24.11■■□□□ 1.45
SHMT1-206ENST00000579558 AP1S1P61966 158 aa24.11■■□□□ 1.45
SHMT1-206ENST00000579558 TMEM52BQ4KMG9 183 aa24.11■■□□□ 1.45
SHMT1-206ENST00000579558 ERAP2Q6P179 960 aa24.11■■□□□ 1.45
SHMT1-206ENST00000579558 DCP2Q8IU60 420 aaKnown RBP24.11■■□□□ 1.45
SHMT1-206ENST00000579558 MRFAP1L1Q96HT8 127 aa24.11■■□□□ 1.45
SHMT1-206ENST00000579558 SCNM1Q9BWG6 230 aa24.11■■□□□ 1.45
SHMT1-206ENST00000579558 FTSJ1Q9UET6 329 aa24.11■■□□□ 1.45
SHMT1-206ENST00000579558 PAFAH1B3Q15102 231 aaKnown RBP24.1■■□□□ 1.45
SHMT1-206ENST00000579558 ZSWIM9Q86XI8 627 aa24.1■■□□□ 1.45
SHMT1-206ENST00000579558 LRRC49Q8IUZ0 686 aa24.1■■□□□ 1.45
SHMT1-206ENST00000579558 SLC22A18ASQ8N1D0 253 aa24.1■■□□□ 1.45
SHMT1-206ENST00000579558 PNPLA1Q8N8W4 532 aa24.1■■□□□ 1.45
SHMT1-206ENST00000579558 FAF2Q96CS3 445 aa24.1■■□□□ 1.45
SHMT1-206ENST00000579558 C1QTNF7Q9BXJ2 289 aa24.1■■□□□ 1.45
SHMT1-206ENST00000579558 ATP8A1Q9Y2Q0 1164 aa24.1■■□□□ 1.45
SHMT1-206ENST00000579558 CHD8Q9HCK8 2581 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 TTC24A2A3L6 582 aaPredicted RBP24.09■■□□□ 1.45
SHMT1-206ENST00000579558 GOLGA8CPA6NN73 597 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 TNFSF14O43557 240 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 SDC3O75056 442 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 ATXN1LP0C7T5 689 aaKnown RBP24.09■■□□□ 1.45
SHMT1-206ENST00000579558 KDELR1P24390 212 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 MAGEA1P43355 309 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 MMP13P45452 471 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 RABIFP47224 123 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 GALNT2Q10471 571 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 MARC1Q5VT66 337 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 SLCO6A1Q86UG4 719 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 GAS2L3Q86XJ1 694 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 PGBD5Q8N414 524 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 CHCHD4Q8N4Q1 142 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 EID2Q8N6I1 236 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 RAPGEF5Q92565 580 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 ECHDC3Q96DC8 303 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 MGME1Q9BQP7 344 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 ANP32EQ9BTT0 268 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 SCUBE2Q9NQ36 999 aa24.09■■□□□ 1.45
SHMT1-206ENST00000579558 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP24.08■■□□□ 1.45
SHMT1-206ENST00000579558 LRRD1A4D1F6 860 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 RIOK3O14730 519 aaKnown RBP24.08■■□□□ 1.45
SHMT1-206ENST00000579558 PRKCGP05129 697 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 MMP12P39900 470 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 GARSP41250 739 aaKnown RBP24.08■■□□□ 1.45
SHMT1-206ENST00000579558 KANSL1Q7Z3B3 1105 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 RAB44Q7Z6P3 723 aaPredicted RBP24.08■■□□□ 1.45
SHMT1-206ENST00000579558 ADAMTS14Q8WXS8 1223 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 CENPTQ96BT3 561 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 NSMCE3Q96MG7 304 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 NUDCD1Q96RS6 583 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 GPR27Q9NS67 375 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 TOR4AQ9NXH8 423 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 COQ6Q9Y2Z9 468 aa24.08■■□□□ 1.45
SHMT1-206ENST00000579558 COL5A1P20908 1838 aaPredicted RBP24.07■■□□□ 1.44
SHMT1-206ENST00000579558 TRAFD1O14545 582 aaPredicted RBP24.07■■□□□ 1.44
SHMT1-206ENST00000579558 MAP3K6O95382 1288 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 CR2P20023 1033 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 IGFALSP35858 605 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 MAXP61244 160 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 SEMG2Q02383 582 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 TCEAL1Q15170 157 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 KDM7AQ6ZMT4 941 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 CCDC170Q8IYT3 715 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 PQLC3Q8N755 202 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 CNDP2Q96KP4 475 aaKnown RBP24.07■■□□□ 1.44
SHMT1-206ENST00000579558 KLK13Q9UKR3 277 aa24.07■■□□□ 1.44
SHMT1-206ENST00000579558 LRRK1Q38SD2 2015 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 LCA5LO95447 670 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 LDOC1O95751 146 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-206ENST00000579558 C6P13671 934 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 CYLC1P35663 651 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-206ENST00000579558 SLC1A1P43005 524 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 NOP2P46087 812 aaKnown RBP24.06■■□□□ 1.44
SHMT1-206ENST00000579558 PFN3P60673 137 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 POLR2LP62875 67 aaKnown RBP24.06■■□□□ 1.44
SHMT1-206ENST00000579558 GBE1Q04446 702 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 PDE1CQ14123 709 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-206ENST00000579558 FZD2Q14332 565 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 IFI16Q16666 785 aaKnown RBP24.06■■□□□ 1.44
SHMT1-206ENST00000579558 TIGD7Q6NT04 549 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-206ENST00000579558 TP53I13Q8NBR0 393 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-206ENST00000579558 IFT43Q96FT9 208 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 RNF157Q96PX1 679 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 PANX2Q96RD6 677 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 NOD2Q9HC29 1040 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 NT5MQ9NPB1 228 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 DNAJC28Q9NX36 388 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms