RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 FAM193AP78312 1265 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 SEMG2Q02383 582 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 NSUN2Q08J23 767 aaKnown RBP eCLIP19.67■□□□□ 0.74
SS18-209ENST00000578595 TMEM259Q4ZIN3 620 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 PRAMEF14Q5SWL7 426 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 BRAT1Q6PJG6 821 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 MFSD7Q6UXD7 560 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 TMEM139Q8IV31 216 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 KLHDC7BQ96G42 594 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 PCDHB9Q9Y5E1 797 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 A0A1W2PR77 199 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 MACROD2A1Z1Q3 448 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 TLR4O00206 839 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 MMP20O60882 483 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 KCNK5O95279 499 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 THEGLP0DJG4 465 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 MARCKSL1P49006 195 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 AP1B1Q10567 949 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 KIF5AQ12840 1032 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 UGP2Q16851 508 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 NPNTQ6UXI9 565 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 CCDC13Q8IYE1 715 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 PGBD5Q8N414 524 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 MFSD2AQ8NA29 543 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 NUDCD1Q96RS6 583 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 PCDH12Q9NPG4 1184 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 RBM22Q9NW64 420 aaKnown RBP eCLIP19.66■□□□□ 0.74
SS18-209ENST00000578595 DTLQ9NZJ0 730 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 SEPT10Q9P0V9 454 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 SALL4Q9UJQ4 1053 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 ATP8A1Q9Y2Q0 1164 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 DUSP10Q9Y6W6 482 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 NCOR2Q9Y618 2525 aa19.66■□□□□ 0.74
SS18-209ENST00000578595 C3orf70A6NLC5 250 aaPredicted RBP19.65■□□□□ 0.74
SS18-209ENST00000578595 TM4SF5O14894 197 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 GIPC1O14908 333 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 PPP1R12AO14974 1030 aaPredicted RBP19.65■□□□□ 0.74
SS18-209ENST00000578595 AREL1O15033 823 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 MATN3O15232 486 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 SPINT1O43278 529 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 TM7SF2O76062 418 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 PEX11BO96011 259 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 KRT10P13645 584 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 CCNCP24863 283 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 NXPH1P58417 271 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 POLR2LP62875 67 aaKnown RBP19.65■□□□□ 0.74
SS18-209ENST00000578595 TFDP2Q14188 446 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 SLC9A4Q6AI14 798 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 SPOCD1Q6ZMY3 1216 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 ZSCAN30Q86W11 494 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 VSIG1Q86XK7 387 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 NAXDQ8IW45 347 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 PLD5Q8N7P1 536 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 VOPP1Q96AW1 172 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 HDAC11Q96DB2 347 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 RBM41Q96IZ5 413 aaKnown RBP19.65■□□□□ 0.74
SS18-209ENST00000578595 LGMNQ99538 433 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 SEMA3CQ99985 751 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 MGME1Q9BQP7 344 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 C1QTNF7Q9BXJ2 289 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 POLR1EQ9GZS1 481 aaKnown RBP19.65■□□□□ 0.74
SS18-209ENST00000578595 LACRTQ9GZZ8 138 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 NOD2Q9HC29 1040 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 PCDHGC4Q9Y5F7 938 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 DCHS1Q96JQ0 3298 aa19.65■□□□□ 0.74
SS18-209ENST00000578595 TSPAN11A1L157 253 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 A6NNZ2 444 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 ZNF487B1APH4 448 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 C10orf142B7Z368 130 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 KCNK1O00180 336 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 FPGTO14772 594 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 SH3BP5O60239 455 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 LZTS3O60299 673 aaPredicted RBP19.64■□□□□ 0.73
SS18-209ENST00000578595 ZRANB2O95218 330 aaKnown RBP eCLIP19.64■□□□□ 0.73
SS18-209ENST00000578595 CPP00450 1065 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 CD59P13987 128 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 CCNB1P14635 433 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 CSRP1P21291 193 aaKnown RBP19.64■□□□□ 0.73
SS18-209ENST00000578595 ARRB1P49407 418 aaPredicted RBP19.64■□□□□ 0.73
SS18-209ENST00000578595 SUOXP51687 545 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 SLC10A2Q12908 348 aaPredicted RBP19.64■□□□□ 0.73
SS18-209ENST00000578595 SLC14A1Q13336 389 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 HNRNPDQ14103 355 aaKnown RBP19.64■□□□□ 0.73
SS18-209ENST00000578595 FGL2Q14314 439 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 SUZ12Q15022 739 aaKnown RBP19.64■□□□□ 0.73
SS18-209ENST00000578595 ZNF423Q2M1K9 1284 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 CCDC181Q5TID7 509 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 ZSWIM9Q86XI8 627 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 OR13H1Q8NG92 308 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 KIAA1524Q8TCG1 905 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 HCAR2Q8TDS4 363 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 HAUS1Q96CS2 278 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 CALR3Q96L12 384 aaKnown RBP19.64■□□□□ 0.73
SS18-209ENST00000578595 ELF4Q99607 663 aaPredicted RBP19.64■□□□□ 0.73
SS18-209ENST00000578595 TRIM10Q9UDY6 481 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 COQ6Q9Y2Z9 468 aa19.64■□□□□ 0.73
SS18-209ENST00000578595 MED19A0JLT2 244 aaPredicted RBP19.63■□□□□ 0.73
SS18-209ENST00000578595 A8MX80 341 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 RAD51BO15315 384 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 DFNA5O60443 496 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms