RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FOLH1Q04609 750 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 ART3Q13508 389 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 FAM83EQ2M2I3 478 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 CHSY3Q70JA7 882 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 RANBP9Q96S59 729 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 NPAS2Q99743 824 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 TNFRSF12AQ9NP84 129 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 GTSE1Q9NYZ3 720 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 ME2P23368 584 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 PAX3P23760 479 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 IHHQ14623 411 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 SLC14A2Q15849 920 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 ARMC3Q5W041 872 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 ZFP1Q6P2D0 407 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 UMODL1-AS1Q8N2C9 162 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 GALNT15Q8N3T1 639 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 RNF148Q8N7C7 305 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 SPPL2BQ8TCT7 592 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 FNIP2Q9P278 1114 aa22.95■■□□□ 1.26
VPS53-211ENST00000571805 A8MT66 165 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 ACOT8O14734 319 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 OR4Q2P0C623 313 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 TYMPP19971 482 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 THPOP40225 353 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 PDK3Q15120 406 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 ZNF683Q8IZ20 524 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 PNPLA1Q8N8W4 532 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 OR13J1Q8NGT2 312 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 CALML6Q8TD86 181 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 UROC1Q96N76 676 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 SERPINB11Q96P15 392 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 GCNAQ96QF7 691 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 RIMS3Q9UJD0 308 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 BCAS2O75934 225 aaPredicted RBP22.94■■□□□ 1.26
VPS53-211ENST00000571805 SERPINH1P50454 418 aaKnown RBP22.94■■□□□ 1.26
VPS53-211ENST00000571805 CLCN5P51795 746 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 AGAP9Q5VTM2 703 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 UGT2A3Q6UWM9 527 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 RNF135Q8IUD6 432 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 ST13P4Q8IZP2 240 aaPredicted RBP22.94■■□□□ 1.26
VPS53-211ENST00000571805 HMGCLL1Q8TB92 370 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 DCUN1D1Q96GG9 259 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 SLC39A13Q96H72 371 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 UBXN10Q96LJ8 280 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 CYP4F12Q9HCS2 524 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 BCAP29Q9UHQ4 241 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 DOCK4Q8N1I0 1966 aa22.94■■□□□ 1.26
VPS53-211ENST00000571805 J3KR12 359 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 IPO13O94829 963 aaKnown RBP22.93■■□□□ 1.26
VPS53-211ENST00000571805 MMP2P08253 660 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 LTA4HP09960 611 aaKnown RBP22.93■■□□□ 1.26
VPS53-211ENST00000571805 RENBPP51606 427 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 LIN52Q52LA3 116 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 TMEM126BQ8IUX1 230 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 BHLHE22Q8NFJ8 381 aaPredicted RBP22.93■■□□□ 1.26
VPS53-211ENST00000571805 CCDC126Q96EE4 140 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 ADAM2Q99965 735 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 NT5MQ9NPB1 228 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 CCDC166P0CW27 439 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 ADGRE1Q14246 886 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 GK5Q6ZS86 529 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 LILRA2Q8N149 483 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 SOCS4Q8WXH5 440 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 FATE1Q969F0 183 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 FAR2Q96K12 515 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 MEAF6Q9HAF1 191 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 TLR6Q9Y2C9 796 aa22.93■■□□□ 1.26
VPS53-211ENST00000571805 DENRO43583 198 aaKnown RBP22.92■■□□□ 1.26
VPS53-211ENST00000571805 AP1G1O43747 822 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 PAPSS2O95340 614 aaPredicted RBP22.92■■□□□ 1.26
VPS53-211ENST00000571805 ARSAP15289 507 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 CD86P42081 329 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 NDST2P52849 883 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 C1QTNF8P60827 252 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 MAXP61244 160 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 YWHAHQ04917 246 aaPredicted RBP22.92■■□□□ 1.26
VPS53-211ENST00000571805 SLC10A7Q0GE19 358 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 LPIN1Q14693 890 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 TLR1Q15399 786 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 RPS27LQ71UM5 84 aaKnown RBP22.92■■□□□ 1.26
VPS53-211ENST00000571805 TICAM1Q8IUC6 712 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 SCN4BQ8IWT1 228 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 ANKRD49Q8WVL7 239 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 HMCESQ96FZ2 354 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 PRDM5Q9NQX1 630 aaPredicted RBP22.92■■□□□ 1.26
VPS53-211ENST00000571805 UTP6Q9NYH9 597 aaKnown RBP22.92■■□□□ 1.26
VPS53-211ENST00000571805 HAPLN1P10915 354 aaPredicted RBP22.92■■□□□ 1.26
VPS53-211ENST00000571805 GRIA2P42262 883 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 SLC39A12Q504Y0 691 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 HECTD2Q5U5R9 776 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 TFAP2DQ7Z6R9 452 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 GALNT7Q86SF2 657 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 CILP2Q8IUL8 1156 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 TMA16Q96EY4 203 aaKnown RBP22.92■■□□□ 1.26
VPS53-211ENST00000571805 LRGUKQ96M69 825 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 KLHL5Q96PQ7 755 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 VPS45Q9NRW7 570 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 PCDHB8Q9UN66 801 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 FIS1Q9Y3D6 152 aa22.92■■□□□ 1.26
VPS53-211ENST00000571805 PRSS51A0A1B0GVH4 220 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms