RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MMP20O60882 483 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 PPP6R2O75170 966 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 RFPL1O75677 317 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 OR1D5P58170 312 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 CDK17Q00537 523 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 EIF2S3LQ2VIR3 472 aaKnown RBP18.26■□□□□ 0.51
CLK3-227ENST00000570296 SPECC1LQ69YQ0 1117 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 TMEM270Q6UE05 265 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 SFTPA2Q8IWL1 248 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 PLPP6Q8IY26 295 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 UNC5BQ8IZJ1 945 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 OR4D9Q8NGE8 314 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 CXorf40AQ8TE69 158 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 DDIT4Q9NX09 232 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 HECAQ9UBI9 543 aaPredicted RBP18.26■□□□□ 0.51
CLK3-227ENST00000570296 AKAP9Q99996 3911 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 NAV3Q8IVL0 2385 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 CCDC168Q8NDH2 2452 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 MED13LQ71F56 2210 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 BRD2P25440 801 aaKnown RBP18.25■□□□□ 0.51
CLK3-227ENST00000570296 LRRC14Q15048 493 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 KLHL40Q2TBA0 621 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 ANKS6Q68DC2 871 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 ZC3H18Q86VM9 953 aaKnown RBP18.25■□□□□ 0.51
CLK3-227ENST00000570296 KIAA1524Q8TCG1 905 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 PDXPQ96GD0 296 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 WDR92Q96MX6 357 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 MED15Q96RN5 788 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 DPYSL5Q9BPU6 564 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 DPEP2Q9H4A9 486 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 ZSCAN16Q9H4T2 348 aaPredicted RBP18.25■□□□□ 0.51
CLK3-227ENST00000570296 THAP9Q9H5L6 903 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 CYP4F12Q9HCS2 524 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 COQ4Q9Y3A0 265 aa18.25■□□□□ 0.51
CLK3-227ENST00000570296 DOCK4Q8N1I0 1966 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 CSMD2Q7Z408 3487 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 CUTAO60888 179 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 ADCY5O95622 1261 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 THRAP10827 490 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 CD1CP29017 333 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 ALDH4A1P30038 563 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 MAN1A1P33908 653 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 GGCXP38435 758 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 ADAM9Q13443 819 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 NAA30Q147X3 362 aaPredicted RBP18.24■□□□□ 0.51
CLK3-227ENST00000570296 ALFQ53S48 1182 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 KDELC2Q7Z4H8 507 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 FAM129CQ86XR2 697 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 IRF2BP1Q8IU81 584 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 GRAMD1CQ8IYS0 662 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 NRSN1Q8IZ57 195 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 RTP4Q96DX8 246 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 TCTN2Q96GX1 697 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 ZPBPQ9BS86 351 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 APOOQ9BUR5 198 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 OSBPL1AQ9BXW6 950 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 SLC29A3Q9BZD2 475 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 OCIAD1Q9NX40 245 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 ERRFI1Q9UJM3 462 aaPredicted RBP18.24■□□□□ 0.51
CLK3-227ENST00000570296 TLK1Q9UKI8 766 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 PCDHB3Q9Y5E6 796 aa18.24■□□□□ 0.51
CLK3-227ENST00000570296 TNRC6AQ8NDV7 1962 aaKnown RBP18.24■□□□□ 0.51
CLK3-227ENST00000570296 ANKRD36A6QL64 1941 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 SYNJ2BP-COX16A0A087WUM0 186 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 RHPN2P1A8MT19 583 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 PAGE1O75459 146 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 ZMPSTE24O75844 475 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 PDGFAP04085 211 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 GPD2P43304 727 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 GPR3P46089 330 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 PMS2P54278 862 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 WSCD2Q2TBF2 565 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 ZNF783Q6ZMS7 281 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 NYAP1Q6ZVC0 841 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 C17orf82Q86X59 251 aaPredicted RBP18.23■□□□□ 0.51
CLK3-227ENST00000570296 BMPERQ8N8U9 685 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 PRR7Q8TB68 274 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 STK32AQ8WU08 396 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 ISG20Q96AZ6 181 aaKnown RBP18.23■□□□□ 0.51
CLK3-227ENST00000570296 COX16Q9P0S2 106 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 POLHQ9Y253 713 aa18.23■□□□□ 0.51
CLK3-227ENST00000570296 FCF1Q9Y324 198 aaKnown RBP18.23■□□□□ 0.51
CLK3-227ENST00000570296 TMEM184BQ9Y519 407 aaPredicted RBP18.23■□□□□ 0.51
CLK3-227ENST00000570296 TCP11X1B4DZS4 312 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 HNRNPRO43390 633 aaKnown RBP18.22■□□□□ 0.51
CLK3-227ENST00000570296 SORBS2O94875 1100 aaKnown RBP18.22■□□□□ 0.51
CLK3-227ENST00000570296 STAT5AP42229 794 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 MRPL49Q13405 166 aaKnown RBP18.22■□□□□ 0.51
CLK3-227ENST00000570296 SQSTM1Q13501 440 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 CBWD6Q4V339 395 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 CBWD3Q5JTY5 395 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 CBWD5Q5RIA9 395 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 KCTD16Q68DU8 428 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 TTC7BQ86TV6 843 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 CEP57L1Q8IYX8 460 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 OR7D4Q8NG98 312 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 SLC4A5Q9BY07 1137 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 TM6SF2Q9BZW4 377 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 OR1A2Q9Y585 309 aa18.22■□□□□ 0.51
CLK3-227ENST00000570296 PCDHB4Q9Y5E5 795 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms