RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CD48P09326 243 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 SERPINA4P29622 427 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 MAN1A1P33908 653 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 PFN3P60673 137 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 MMRN1Q13201 1228 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 CFAP58Q5T655 872 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 CPNE8Q86YQ8 564 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 LRRC49Q8IUZ0 686 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 SLC25A45Q8N413 288 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 ECHDC3Q96DC8 303 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 CNDP2Q96KP4 475 aaKnown RBP20.48■□□□□ 0.87
CLK3-225ENST00000569063 C1QTNF7Q9BXJ2 289 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 PCDH12Q9NPG4 1184 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 AKR1B15C9JRZ8 316 aaPredicted RBP20.47■□□□□ 0.87
CLK3-225ENST00000569063 ENC1O14682 589 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 RIOK3O14730 519 aaKnown RBP20.47■□□□□ 0.87
CLK3-225ENST00000569063 SDC3O75056 442 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 KRT7P08729 469 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 DGKAP23743 735 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 HSPA9P38646 679 aaKnown RBP20.47■□□□□ 0.87
CLK3-225ENST00000569063 TAS2R40P59535 323 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 AP1S1P61966 158 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 BCL2L1Q07817 233 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 DPYSL3Q14195 570 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 FZD2Q14332 565 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 PDK2Q15119 407 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 ATP13A4Q4VNC1 1196 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 ZSWIM9Q86XI8 627 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 ATPAF2Q8N5M1 289 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 SLC35G2Q8TBE7 412 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 WRAP53Q9BUR4 548 aaKnown RBP20.47■□□□□ 0.87
CLK3-225ENST00000569063 SPTLC3Q9NUV7 552 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 PCDHGA1Q9Y5H4 931 aa20.47■□□□□ 0.87
CLK3-225ENST00000569063 TRAFD1O14545 582 aaPredicted RBP20.46■□□□□ 0.87
CLK3-225ENST00000569063 SCNN1BP51168 640 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 ST3GAL2Q16842 350 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 ERAP2Q6P179 960 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 CCNI2Q6ZMN8 369 aaPredicted RBP20.46■□□□□ 0.87
CLK3-225ENST00000569063 TMPRSS7Q7RTY8 843 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 MAP7D3Q8IWC1 876 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 KDF1Q8NAX2 398 aaPredicted RBP20.46■□□□□ 0.87
CLK3-225ENST00000569063 KCTD6Q8NC69 237 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 SPOCK2Q92563 424 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 ZNF670Q9BS34 389 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 TRIM5Q9C035 493 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 ATP8A1Q9Y2Q0 1164 aa20.46■□□□□ 0.87
CLK3-225ENST00000569063 ACACBO00763 2458 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.45■□□□□ 0.86
CLK3-225ENST00000569063 CFAP69A5D8W1 941 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 TMEM8BA6NDV4 472 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 TOR1BO14657 336 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 PIAS2O75928 621 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 MTA2O94776 668 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 CSF2P04141 144 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 C1SP09871 688 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 CR2P20023 1033 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 IGFALSP35858 605 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 MMP12P39900 470 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 ARHGAP25P42331 645 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 YPEL5P62699 121 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 POLR2LP62875 67 aaKnown RBP20.45■□□□□ 0.86
CLK3-225ENST00000569063 ZNF211Q13398 564 aaPredicted RBP20.45■□□□□ 0.86
CLK3-225ENST00000569063 PDE1CQ14123 709 aaPredicted RBP20.45■□□□□ 0.86
CLK3-225ENST00000569063 ZNF235Q14590 738 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 PAFAH1B3Q15102 231 aaKnown RBP20.45■□□□□ 0.86
CLK3-225ENST00000569063 AGERQ15109 404 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 ANKRD20A8PQ5CZ79 823 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 PARGQ86W56 976 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 RHOT2Q8IXI1 618 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 BBS5Q8N3I7 341 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 PGBD5Q8N414 524 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 TP53I13Q8NBR0 393 aaPredicted RBP20.45■□□□□ 0.86
CLK3-225ENST00000569063 PCDH19Q8TAB3 1148 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 NSMCE1Q8WV22 266 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 NSMCE3Q96MG7 304 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 NUDCD1Q96RS6 583 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 MGME1Q9BQP7 344 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 UCKL1Q9NWZ5 548 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 DNAJC28Q9NX36 388 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 FRYQ5TBA9 3013 aa20.45■□□□□ 0.86
CLK3-225ENST00000569063 TRIM38O00635 465 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 CDK4P11802 303 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 NME1P15531 152 aaKnown RBP20.44■□□□□ 0.86
CLK3-225ENST00000569063 CKMT2P17540 419 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 GJC1P36383 396 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 LIG3P49916 1009 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 HNRNPKP61978 463 aaKnown RBP eCLIP20.44■□□□□ 0.86
CLK3-225ENST00000569063 GALNT2Q10471 571 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 DNAJC3Q13217 504 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 PTK2BQ14289 1009 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 MESDQ14696 234 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 SMAD1Q15797 465 aaKnown RBP20.44■□□□□ 0.86
CLK3-225ENST00000569063 PROX2Q3B8N5 592 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 MARC1Q5VT66 337 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 NCBP2-AS2Q69YL0 99 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 GALNT15Q8N3T1 639 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 TEX26Q8N6G2 289 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 OR4C6Q8NH72 309 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 FAF2Q96CS3 445 aa20.44■□□□□ 0.86
CLK3-225ENST00000569063 MBNL1Q9NR56 388 aaKnown RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms