RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 STYXQ8WUJ0 223 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 CENPIQ92674 756 aaPredicted RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 TEKT5Q96M29 485 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 KLHL5Q96PQ7 755 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 SLC25A23Q9BV35 468 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 UNC93B1Q9H1C4 597 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 SARS2Q9NP81 518 aaKnown RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 PNPLA3Q9NST1 481 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 CACNA2D2Q9NY47 1150 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 TRHDEQ9UKU6 1024 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 TRAF6Q9Y4K3 522 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 SIX3O95343 332 aaPredicted RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 MAP4P27816 1152 aaKnown RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 GABRB3P28472 473 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 NAA20P61599 178 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 ARHGAP1Q07960 439 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 INPP5AQ14642 412 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 PFKFB4Q16877 469 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 BLOC1S5Q8TDH9 187 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 NCSTNQ92542 709 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 NPY6RQ99463 290 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 AAR2Q9Y312 384 aaKnown RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 ATP6V1G1O75348 118 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 HMBSP08397 361 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 MTHFD1P11586 935 aaKnown RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 PSMA4P25789 261 aaKnown RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 RNF168Q8IYW5 571 aaPredicted RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 LSMEM2Q8N112 164 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 ASB9Q96DX5 294 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 MRPL57Q9BQC6 102 aaKnown RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 SENP6Q9GZR1 1112 aaPredicted RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 CCDC90BQ9GZT6 254 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 CLK4Q9HAZ1 481 aaKnown RBP14.59□□□□□ -0.07
VPS35-210ENST00000568784 CDC14AQ9UNH5 594 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 CLEC11AQ9Y240 323 aa14.59□□□□□ -0.07
VPS35-210ENST00000568784 ZBBXA8MT70 800 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 SOCS7O14512 581 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 DCLK1O15075 740 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 PCNAP12004 261 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 GRAMD4Q6IC98 578 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 XKR5Q6UX68 686 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 RAB44Q7Z6P3 723 aaPredicted RBP14.58□□□□□ -0.07
VPS35-210ENST00000568784 CPNE9Q8IYJ1 553 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 GIPC3Q8TF64 312 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 SENP8Q96LD8 212 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 RCOR3Q9P2K3 495 aaPredicted RBP14.58□□□□□ -0.07
VPS35-210ENST00000568784 EBF1Q9UH73 591 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 USP3Q9Y6I4 520 aa14.58□□□□□ -0.07
VPS35-210ENST00000568784 NCAM2O15394 837 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 ANXA9O76027 345 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 DDNO94850 711 aaPredicted RBP14.58□□□□□ -0.08
VPS35-210ENST00000568784 LINC00032P0C843 101 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 SULT2A1Q06520 285 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 SLC44A4Q53GD3 710 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 FASTKD5Q7L8L6 764 aaKnown RBP14.58□□□□□ -0.08
VPS35-210ENST00000568784 PIM3Q86V86 326 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 LPPQ93052 612 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 RNF11Q9Y3C5 154 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 CCR1P32246 355 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 ADRM1Q16186 407 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 CHSY3Q70JA7 882 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 TRPC4APQ8TEL6 797 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 FBXL20Q96IG2 436 aa14.58□□□□□ -0.08
VPS35-210ENST00000568784 UTP6Q9NYH9 597 aaKnown RBP14.58□□□□□ -0.08
VPS35-210ENST00000568784 A0A0J9YYE9 177 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 LRRC14BA6NHZ5 514 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 SOCS2O14508 198 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 FASP25445 335 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 RHDQ02161 417 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 NFYCQ13952 458 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 SQLEQ14534 574 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 PAFAH1B3Q15102 231 aaKnown RBP14.57□□□□□ -0.08
VPS35-210ENST00000568784 LDLRAP1Q5SW96 308 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 BTBD8Q5XKL5 378 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 GAD1Q99259 594 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 ZNF696Q9H7X3 374 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 SEMA4BQ9NPR2 832 aaPredicted RBP14.57□□□□□ -0.08
VPS35-210ENST00000568784 PRSS51A0A1B0GVH4 220 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 DHRS12A0PJE2 317 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 SUPT3HB4E1H0 165 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 BOLA2-SMG1P6H3BVE0 249 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 HTRA2O43464 458 aaPredicted RBP14.57□□□□□ -0.08
VPS35-210ENST00000568784 IPO13O94829 963 aaKnown RBP14.57□□□□□ -0.08
VPS35-210ENST00000568784 MYL3P08590 195 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 HOXA11P31270 313 aaPredicted RBP14.57□□□□□ -0.08
VPS35-210ENST00000568784 TRAF2Q12933 501 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 SH3D19Q5HYK7 790 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 KLHL35Q6PF15 583 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 POTEHQ6S545 545 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 CRYBG2Q8N1P7 616 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 RDH11Q8TC12 318 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 ESAMQ96AP7 390 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 LRCH3Q96II8 777 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.57□□□□□ -0.08
VPS35-210ENST00000568784 CPA4Q9UI42 421 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 PCDHGA7Q9Y5G6 932 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 A8MT66 165 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 H3BMM5 538 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 DPYSQ14117 519 aa14.57□□□□□ -0.08
VPS35-210ENST00000568784 PTGR2Q8N8N7 351 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms