RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	PCDH20	Q8N6Y1	951 aa	Known RBP	11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	GALNT11	Q8NCW6	608 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	RAB7B	Q96AH8	199 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	VOPP1	Q96AW1	172 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	CCDC74B	Q96LY2	380 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	RBM15	Q96T37	977 aa	Known RBP eCLIP	11.9	□□□□□ -0.5	3e-6	■■■■□ 24.3
CLK3-222	ENST00000568232	WRAP53	Q9BUR4	548 aa	Known RBP	11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	TRIM62	Q9BVG3	475 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	SLC4A5	Q9BY07	1137 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	GPN2	Q9H9Y4	310 aa	Predicted RBP	11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	PRDM8	Q9NQV8	689 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	ANLN	Q9NQW6	1124 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	MPP6	Q9NZW5	540 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	PCDHA7	Q9UN72	937 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	COQ6	Q9Y2Z9	468 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	OR1A2	Q9Y585	309 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232		I6L893	689 aa	Predicted RBP	11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	GRAP2	O75791	330 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	CD160	O95971	181 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	TBXAS1	P24557	533 aa	Predicted RBP	11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	ALDH4A1	P30038	563 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	ACADSB	P45954	432 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	PEX5	P50542	639 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	ARF5	P84085	180 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	SEPT6	Q14141	434 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	ZNF805	Q5CZA5	627 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	MAMDC2	Q7Z304	686 aa	Predicted RBP	11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	TAF8	Q7Z7C8	310 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	SETD3	Q86TU7	594 aa	Predicted RBP	11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	TTC7B	Q86TV6	843 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	FAM114A1	Q8IWE2	563 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	ZNF683	Q8IZ20	524 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	CCL4L1	Q8NHW4	92 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	PDXP	Q96GD0	296 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	KLHL32	Q96NJ5	620 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	CEP44	Q9C0F1	390 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	THAP9	Q9H5L6	903 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	OCIAD1	Q9NX40	245 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	SLC39A1	Q9NY26	324 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	KL	Q9UEF7	1012 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	PILRA	Q9UKJ1	303 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	VPS9D1	Q9Y2B5	631 aa		11.89	□□□□□ -0.51
CLK3-222	ENST00000568232	UNC13C	Q8NB66	2214 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	TTLL8	A6PVC2	850 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	KRIT1	O00522	736 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	TOR1B	O14657	336 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	HGS	O14964	777 aa	Predicted RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	CAPN5	O15484	640 aa	Predicted RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	NUDT21	O43809	227 aa	Known RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	TNF	P01375	233 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	UGT2B4	P06133	528 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	EPB41	P11171	864 aa	Known RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	ME1	P48163	572 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	MAZ	P56270	477 aa	Known RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	INPP5A	Q14642	412 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	NFATC4	Q14934	902 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	WSCD2	Q2TBF2	565 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	NKAIN2	Q5VXU1	208 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	ANKS6	Q68DC2	871 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	RETSAT	Q6NUM9	610 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	FOXR2	Q6PJQ5	311 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	ASB18	Q6ZVZ8	466 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	TMEM110	Q86TL2	294 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	PPM1K	Q8N3J5	372 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	CPT1C	Q8TCG5	803 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	CXorf40A	Q8TE69	158 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	OR1E3	Q8WZA6	343 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	ZNF396	Q96N95	335 aa	Predicted RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	SLC2A13	Q96QE2	648 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	MED15	Q96RN5	788 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	APOO	Q9BUR5	198 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	TMEM168	Q9H0V1	697 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	DPEP2	Q9H4A9	486 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	MRPL40	Q9NQ50	206 aa	Known RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	CASS4	Q9NQ75	786 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	CUEDC1	Q9NWM3	386 aa	Predicted RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	MRPS18B	Q9Y676	258 aa	Known RBP	11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	KCNMB2	Q9Y691	235 aa		11.88	□□□□□ -0.51
CLK3-222	ENST00000568232	DRGX	A6NNA5	263 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	TMEM110-MUSTN1	A8MSY1	372 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	RHOBTB3	O94955	611 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	PDGFA	P04085	211 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	HTR1B	P28222	390 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	CD1C	P29017	333 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	OR1E1	P30953	314 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	LRRC14	Q15048	493 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	EIF2S3L	Q2VIR3	472 aa	Known RBP	11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	EDRF1	Q3B7T1	1238 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	C1QL3	Q5VWW1	255 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	SPECC1L	Q69YQ0	1117 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	TCTN3	Q6NUS6	607 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	RRAGA	Q7L523	313 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	TIPARP	Q7Z3E1	657 aa	Known RBP	11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	IRF2BP1	Q8IU81	584 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	NRSN1	Q8IZ57	195 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	GUF1	Q8N442	669 aa	Known RBP	11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	STARD8	Q92502	1023 aa		11.87	□□□□□ -0.51
CLK3-222	ENST00000568232	FUBP1	Q96AE4	644 aa	Known RBP	11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms