RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CAPN5O15484 640 aaPredicted RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 NKX2-8O15522 239 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 DAB1O75553 588 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ZMPSTE24O75844 475 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 CPNE6O95741 557 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 PNLIPP16233 465 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ITIH2P19823 946 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ALDH4A1P30038 563 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 GNA15P30679 374 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 USP8P40818 1118 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 CXCR3P49682 368 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 SULT1E1P49888 294 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 NDUFA8P51970 172 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 MLLT10P55197 1068 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 RNASE9P60153 205 aaKnown RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 SNRPD1P62314 119 aaKnown RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ARF5P84085 180 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 GNA12Q03113 381 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 RAD51Q06609 339 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 KLRB1Q12918 225 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 BIRC2Q13490 618 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 SEPT6Q14141 434 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 INPP5AQ14642 412 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 NFATC4Q14934 902 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 DEFB109BQ30KR1 87 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 MYLK3Q32MK0 819 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 C14orf28Q4W4Y0 310 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 LACTB2Q53H82 288 aaPredicted RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 EFHC2Q5JST6 749 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 BRMS1LQ5PSV4 323 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 FHL5Q5TD97 284 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 OGFOD3Q6PK18 319 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ZNF783Q6ZMS7 281 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 KRBA2Q6ZNG9 492 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 C11orf57Q6ZUT1 292 aaPredicted RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 NYAP1Q6ZVC0 841 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 FAM183BPQ6ZVS7 135 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 SFTPA2Q8IWL1 248 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 EHBP1Q8NDI1 1231 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 CCDC112Q8NEF3 446 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 OR2AP1Q8NGE2 309 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 LMO3Q8TAP4 145 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 APOBEC4Q8WW27 367 aaKnown RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ART4Q93070 314 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 KIAA1143Q96AT1 154 aaPredicted RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ISG20Q96AZ6 181 aaKnown RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 CCDC34Q96HJ3 373 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 SPATA32Q96LK8 384 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 KREMEN1Q96MU8 473 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 WDR92Q96MX6 357 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 HAPLN3Q96S86 360 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 CPXM1Q96SM3 734 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 APOOQ9BUR5 198 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 OSBPL1AQ9BXW6 950 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 CDH19Q9H159 772 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 SYNCQ9H7C4 482 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 GPN2Q9H9Y4 310 aaPredicted RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 UBE2TQ9NPD8 197 aaPredicted RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ACP6Q9NPH0 428 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 ARHGEF38Q9NXL2 777 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 COQ6Q9Y2Z9 468 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 OR1A2Q9Y585 309 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 B3GALT1Q9Y5Z6 326 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 PRR19A6NJB7 356 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 RHPN2P1A8MT19 583 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 I6L893 689 aaPredicted RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PMM2O15305 246 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 P4HA2O15460 535 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 ZW10O43264 779 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 B4GAT1O43505 415 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 NUDT21O43809 227 aaKnown RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 DUX1O43812 170 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 RAD1O60671 282 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 VPS4BO75351 444 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 GSRP00390 522 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 F9P00740 461 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PCCBP05166 539 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 HSP90AA1P07900 732 aaKnown RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 KRT7P08729 469 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 FGF3P11487 239 aaPredicted RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 TFE3P19532 575 aaPredicted RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 CSTF2P33240 577 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 ACVRL1P37023 503 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 ETFBP38117 255 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 CD97P48960 835 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PPM1FP49593 454 aaPredicted RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PMS1P54277 932 aaKnown RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 GEMIN4P57678 1058 aaKnown RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 SNX16P57768 344 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 OR1D5P58170 312 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 B4GALNT1Q00973 533 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 SLC6A3Q01959 620 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 DEUP1Q05D60 604 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 HLTFQ14527 1009 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 ARHGAP44Q17R89 818 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 WSCD2Q2TBF2 565 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 ATXN7L2Q5T6C5 722 aaPredicted RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 SPECC1LQ69YQ0 1117 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 GDPD4Q6W3E5 623 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 LEKR1Q6ZMV7 388 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms