RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 KCTD3Q9Y597 815 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 BPTFQ12830 3046 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 KRT38O76015 456 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 HOXB8P17481 243 aaPredicted RBP21.43■■□□□ 1.02
CLN3-209ENST00000561689 ARNTP27540 789 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 NAB1Q13506 487 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 TSTD2Q5T7W7 516 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 TMEM215Q68D42 235 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 ZNF557Q8N988 423 aaPredicted RBP21.43■■□□□ 1.02
CLN3-209ENST00000561689 LPCAT1Q8NF37 534 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 PRO3102Q9H379 93 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 MLXIPLQ9NP71 852 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 TXNDC16Q9P2K2 825 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 EVLQ9UI08 416 aaPredicted RBP21.43■■□□□ 1.02
CLN3-209ENST00000561689 ARL5AQ9Y689 179 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 MROH6A6NGR9 719 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 TBX10O75333 385 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 ADH1CP00326 375 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 GKP32189 559 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 ARCN1P48444 511 aaKnown RBP21.43■■□□□ 1.02
CLN3-209ENST00000561689 GEN1Q17RS7 908 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 PDPK2PQ6A1A2 396 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 CES5AQ6NT32 575 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 S1PR5Q9H228 398 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 TRPV4Q9HBA0 871 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 SLCO3A1Q9UIG8 710 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 HS3ST2Q9Y278 367 aa21.43■■□□□ 1.02
CLN3-209ENST00000561689 OTOL1A6NHN0 477 aaPredicted RBP21.42■■□□□ 1.02
CLN3-209ENST00000561689 LDB2O43679 373 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 BUD23O43709 281 aaKnown RBP21.42■■□□□ 1.02
CLN3-209ENST00000561689 BNIP3LO60238 219 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 SHOX2O60902 331 aaPredicted RBP21.42■■□□□ 1.02
CLN3-209ENST00000561689 ALADP13716 330 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 SERPINB9P50453 376 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 ECT2LQ008S8 904 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 LRRC14Q15048 493 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 ACCSLQ4AC99 568 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 STRA8Q7Z7C7 330 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 C12orf40Q86WS4 652 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 CAMK1DQ8IU85 385 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 RYBPQ8N488 228 aaPredicted RBP21.42■■□□□ 1.02
CLN3-209ENST00000561689 KIAA1958Q8N8K9 716 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 SORCS1Q8WY21 1168 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 MYADMQ96S97 322 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 ZFP14Q9HCL3 533 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 CLDND1Q9NY35 253 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.42■■□□□ 1.02
CLN3-209ENST00000561689 SLC25A13Q9UJS0 675 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 SPO11Q9Y5K1 396 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 UNC80Q8N2C7 3258 aa21.42■■□□□ 1.02
CLN3-209ENST00000561689 CCL22O00626 93 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 SLC8A1P32418 973 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 GBP2P32456 591 aaPredicted RBP21.41■■□□□ 1.02
CLN3-209ENST00000561689 GP5P40197 560 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 AP1S1P61966 158 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 MBLAC2Q68D91 279 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 METTL3Q86U44 580 aaKnown RBP21.41■■□□□ 1.02
CLN3-209ENST00000561689 OR13J1Q8NGT2 312 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 CPNE1Q99829 537 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 ADGRE3Q9BY15 652 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 SLC2A11Q9BYW1 496 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 INTS9Q9NV88 658 aaKnown RBP21.41■■□□□ 1.02
CLN3-209ENST00000561689 HOXC11O43248 304 aaPredicted RBP21.41■■□□□ 1.02
CLN3-209ENST00000561689 PIGNO95427 931 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 PYGBP11216 843 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 BMP1P13497 986 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 PAMP19021 973 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 DMC1Q14565 340 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 PTPRCAPQ14761 206 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 PTPRRQ15256 657 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 KIAA0930Q6ICG6 404 aaPredicted RBP21.41■■□□□ 1.02
CLN3-209ENST00000561689 VITQ6UXI7 678 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 AHI1Q8N157 1196 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 BRSK1Q8TDC3 778 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 ATXN7L3BQ96GX2 97 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 FAM83CQ9BQN1 747 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 PCDHB9Q9Y5E1 797 aa21.41■■□□□ 1.02
CLN3-209ENST00000561689 FAM47DPA6NHR8 397 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 ANKRD66B4E2M5 251 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 AURKAO14965 403 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 NFATC1O95644 943 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 IGSF6O95976 241 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 POLR2EP19388 210 aaKnown RBP21.4■■□□□ 1.02
CLN3-209ENST00000561689 SP100P23497 879 aaPredicted RBP21.4■■□□□ 1.02
CLN3-209ENST00000561689 ABCG1P45844 678 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 DGKGP49619 791 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 RALGPS1Q5JS13 557 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 KIAA0907Q7Z7F0 614 aaPredicted RBP21.4■■□□□ 1.02
CLN3-209ENST00000561689 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.4■■□□□ 1.02
CLN3-209ENST00000561689 OR2AP1Q8NGE2 309 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 CYB5D2Q8WUJ1 264 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 MTBPQ96DY7 904 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 THG1LQ9NWX6 298 aaKnown RBP21.4■■□□□ 1.02
CLN3-209ENST00000561689 GGT7Q9UJ14 662 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 FBXO10Q9UK96 956 aa21.4■■□□□ 1.02
CLN3-209ENST00000561689 NUP210Q8TEM1 1887 aaPredicted RBP21.4■■□□□ 1.02
CLN3-209ENST00000561689 PRPF4O43172 522 aaKnown RBP eCLIP21.39■■□□□ 1.02
CLN3-209ENST00000561689 TYROBPO43914 113 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 RFPL1O75677 317 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 PAPSS2O95340 614 aaPredicted RBP21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 152.7 ms