RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 CSF1RP07333 972 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 CYP3A4P08684 503 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 TPM1P09493 284 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 RHOXF2BP0C7M4 288 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 C8orf89P0DMQ9 161 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 HSPA5P11021 654 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 SFTPCP11686 197 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 LYL1P12980 280 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 NCF1P14598 390 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 ETS1P14921 441 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 CREB1P16220 341 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 HOXB9P17482 250 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 EPORP19235 508 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 SDHBP21912 280 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 MATN1P21941 496 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ACHEP22303 614 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 KLRC2P26717 231 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ADORA2AP29274 412 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 GDI1P31150 447 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 SLC6A4P31645 630 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 CHRNA3P32297 505 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ACAA2P42765 397 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 RABIFP47224 123 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 CLK3P49761 638 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 KHKP50053 298 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ZNF134P52741 427 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 GBX2P52951 348 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 MVDP53602 400 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 PDE1AP54750 535 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 VCPP55072 806 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 FAM3BP58499 235 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 YBEYP58557 167 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 TIRAPP58753 221 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 STARD6P59095 220 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ERVFRD-1P60508 538 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ACTR1AP61163 376 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 HAND2P61296 217 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 DMTNQ08495 405 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 MZT1Q08AG7 82 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 CCDC15Q0P6D6 951 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 NFIAQ12857 509 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 PPP1R8Q12972 351 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 IFT88Q13099 833 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ZBTB17Q13105 803 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ITGADQ13349 1161 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 MRPL49Q13405 166 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 CUL2Q13617 745 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ZNF273Q14593 569 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 RRP1BQ14684 758 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 USP10Q14694 798 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 ZMYND11Q15326 602 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 RPS6KA1Q15418 735 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 SYCP1Q15431 976 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ASTE1Q2TB18 679 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 RABL6Q3YEC7 729 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 PLEKHN1Q494U1 663 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 SLC39A12Q504Y0 691 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 KLHL26Q53HC5 615 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 FASTKD1Q53R41 847 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 HS1BP3Q53T59 392 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ZRANB3Q5FWF4 1079 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 XKR9Q5GH70 373 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 SH2D4BQ5SQS7 431 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.08□□□□□ -2.08
RTF1-207ENST00000561076 RBM20Q5T481 1227 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 UBAP2Q5T6F2 1119 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 DAB2IPQ5VWQ8 1189 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 TMEM268Q5VZI3 342 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 FAM91A1Q658Y4 838 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 PLA2G4FQ68DD2 849 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 MCTP1Q6DN14 999 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 RAET1GQ6H3X3 334 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 DHRS7BQ6IAN0 325 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 JADE1Q6IE81 842 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 DPY19L2P1Q6NXN4 242 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 GLB1LQ6UWU2 654 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 KIAA1324Q6UXG2 1013 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 RBPMS2Q6ZRY4 209 aaKnown RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 ZBTB49Q6ZSB9 765 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 PTCHD4Q6ZW05 846 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 USP30Q70CQ3 517 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 PPP1R32Q7Z5V6 425 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 CLNKQ7Z7G1 428 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 NLRX1Q86UT6 975 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 PROSER1Q86XN7 944 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 HACE1Q8IYU2 909 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 OR4N4Q8N0Y3 316 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ABRAQ8N0Z2 381 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 MMP21Q8N119 569 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 AFAP1Q8N556 730 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 LILRA3Q8N6C8 439 aaPredicted RBP2.08□□□□□ -2.08
RTF1-207ENST00000561076 PLD5Q8N7P1 536 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 UXS1Q8NBZ7 420 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 RNF169Q8NCN4 708 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 CCNYQ8ND76 341 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 OR7G3Q8NG95 312 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 OR52L2PQ8NGH6 319 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 ABHD4Q8TB40 342 aa2.08□□□□□ -2.08
RTF1-207ENST00000561076 SLC35B2Q8TB61 432 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms