RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CPNE9Q8IYJ1 553 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 GOLM1Q8NBJ4 401 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ANKK1Q8NFD2 765 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CDKL2Q92772 493 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 USP13Q92995 863 aaPredicted RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 STARD7Q9NQZ5 370 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 VTI1BQ9UEU0 232 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 SARDHQ9UL12 918 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 PCDHB4Q9Y5E5 795 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 M0QZ92 97 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 NUAK1O60285 661 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 JRKO75564 520 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ALDH1A2O94788 518 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 S100BP04271 92 aaPredicted RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 PRKAA2P54646 552 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 PTPN11Q06124 597 aaPredicted RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 CDC20Q12834 499 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 SLC10A2Q12908 348 aaPredicted RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 FAM209AQ5JX71 171 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 PPM1LQ5SGD2 360 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ATG14Q6ZNE5 492 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ERMP1Q7Z2K6 904 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 HEATR4Q86WZ0 1026 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 RFX6Q8HWS3 928 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ZNF781Q8N8C0 355 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 TDRD5Q8NAT2 981 aaKnown RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 PDZD8Q8NEN9 1154 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CMASQ8NFW8 434 aaPredicted RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 VMP1Q96GC9 406 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 MED30Q96HR3 178 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 TXNDC15Q96J42 360 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 OR52B2Q96RD2 323 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CGRRF1Q99675 332 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 PI4K2AQ9BTU6 479 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 C9orf16Q9BUW7 83 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CEP44Q9C0F1 390 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ILKAPQ9H0C8 392 aaPredicted RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 RNF208Q9H0X6 261 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 SIAEQ9HAT2 523 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CPNE5Q9HCH3 593 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 SMOXQ9NWM0 555 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 PKD2L2Q9NZM6 624 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CRNNQ9UBG3 495 aaPredicted RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 MID2Q9UJV3 735 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 SATB2Q9UPW6 733 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ILVBLA1L0T0 632 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 TNNI1P19237 187 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 HOXA11P31270 313 aaPredicted RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 LEPRP48357 1165 aaKnown RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 PRKCQQ04759 706 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 MGAT3Q09327 533 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 TFDP2Q14188 446 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 ZACNQ401N2 412 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 STEAP4Q687X5 459 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 SEL1L3Q68CR1 1132 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 CTU1Q7Z7A3 348 aaKnown RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 TAB3Q8N5C8 712 aaPredicted RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 TMEM35BQ8NCS4 154 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 ZNF516Q92618 1163 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 SLCO4A1Q96BD0 722 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 NOL11Q9H8H0 719 aaKnown RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 CNOT6Q9ULM6 557 aaKnown RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 NOD1Q9Y239 953 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 RBMX2Q9Y388 322 aaKnown RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 RALGAPA2Q2PPJ7 1873 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 HEATR9A2RTY3 570 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 TPP1O14773 563 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 CLOCKO15516 846 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 DNAJB5O75953 348 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 CSPG5O95196 566 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 PRKCGP05129 697 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 CFHP08603 1231 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 STAG3L1P0CL83 205 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 CXCL8P10145 99 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 MBL2P11226 248 aaPredicted RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 TPSB2P20231 275 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 EEF1DP29692 281 aaKnown RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 IDUAP35475 653 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 MSX2P35548 267 aaPredicted RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 THPOP40225 353 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 MAPRE2Q15555 327 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 TPSAB1Q15661 275 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 PPP2R2DQ66LE6 453 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 HMBOX1Q6NT76 420 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 ZNF773Q6PK81 442 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 TMEM270Q6UE05 265 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 PLEKHG7Q6ZR37 379 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 PRR23CQ6ZRP0 262 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 SLC43A3Q8NBI5 491 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 ABHD11Q8NFV4 315 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 ACSF2Q96CM8 615 aaPredicted RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 SIGLEC10Q96LC7 697 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 BCL7BQ9BQE9 202 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 ADPGKQ9BRR6 497 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 SDCBP2Q9H190 292 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 AKIP1Q9NQ31 210 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 SACM1LQ9NTJ5 587 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 C20orf96Q9NUD7 363 aaPredicted RBP10.97□□□□□ -0.65
USP3-206ENST00000558157 GDAP2Q9NXN4 497 aa10.97□□□□□ -0.65
USP3-206ENST00000558157 POU2F3Q9UKI9 436 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms