RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 MAGED2Q9UNF1 606 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 MYOCOSA0A1B0GUC4 107 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 TRIM64A6NGJ6 449 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 GOLGA8TH3BQL2 631 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 CXCR3P49682 368 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 CLCN5P51795 746 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 ATXN3P54252 364 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-231ENST00000557433 NME5P56597 212 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 TAS2R39P59534 338 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 BNIP2Q12982 314 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 INPP5AQ14642 412 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 SLC14A2Q15849 920 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 C6orf10Q5SRN2 563 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 PAQR9Q6ZVX9 377 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 CUZD1Q86UP6 607 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 OSTM1Q86WC4 334 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 HMGCLL1Q8TB92 370 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 MOCOSQ96EN8 888 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 ASB2Q96Q27 587 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 OSBPL6Q9BZF3 934 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 ULBP1Q9BZM6 244 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 PCDHAC1Q9H158 963 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 SEMA6AQ9H2E6 1030 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 MUC13Q9H3R2 512 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 TXNRD2Q9NNW7 524 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 IGSF5Q9NSI5 407 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 CCM2LQ9NUG4 571 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-231ENST00000557433 CDH7Q9ULB5 785 aa16.4■□□□□ 0.22
SHMT2-231ENST00000557433 TMEM233B4DJY2 109 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 F7P08709 466 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 LTA4HP09960 611 aaKnown RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 ZNF286BP0CG31 522 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 HOXD8P13378 290 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 CPB1P15086 417 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 MYF6P23409 242 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 NDUFV1P49821 464 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 MPP1Q00013 466 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 ACAP2Q15057 778 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 HFE2Q6ZVN8 426 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 LZTR1Q8N653 840 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 KLHL23Q8NBE8 558 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 RNF169Q8NCN4 708 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 ZNF420Q8TAQ5 688 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 PPWD1Q96BP3 646 aaKnown RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 SLC45A3Q96JT2 553 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 MED10Q9BTT4 135 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 OSBPL2Q9H1P3 480 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 R3HDMLQ9H3Y0 253 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 NXF3Q9H4D5 531 aaKnown RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 WDCPQ9H6R7 721 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 CDHR5Q9HBB8 845 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 CD320Q9NPF0 282 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 TREX1Q9NSU2 369 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 DDIT4Q9NX09 232 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 DUS2Q9NX74 493 aaKnown RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 GPRC5DQ9NZD1 345 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 OR12D3Q9UGF7 316 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 FBXO5Q9UKT4 447 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 FAF1Q9UNN5 650 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 PAPPA2Q9BXP8 1791 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 SH3PXD2BA1X283 911 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 GABRDO14764 452 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 CSPG5O95196 566 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 FCGR1AP12314 374 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 YY1P25490 414 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 LRPAP1P30533 357 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 SLC1A2P43004 574 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 LILRA4P59901 499 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 RAB41Q5JT25 222 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 ZNF618Q5T7W0 954 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 HMBOX1Q6NT76 420 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 ISLR2Q6UXK2 745 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 ZNF554Q86TJ5 538 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 MFSD6LQ8IWD5 586 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 DENND6AQ8IWF6 608 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 MYO1HQ8N1T3 1032 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 CYP2S1Q96SQ9 504 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 IL12RB2Q99665 862 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 SLC29A1Q99808 456 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 OMDQ99983 421 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 TRIM62Q9BVG3 475 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 NOL11Q9H8H0 719 aaKnown RBP16.39■□□□□ 0.21
SHMT2-231ENST00000557433 GLOD4Q9HC38 313 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 ACSS2Q9NR19 701 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 NDUFAF1Q9Y375 327 aa16.39■□□□□ 0.21
SHMT2-231ENST00000557433 A8MT66 165 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 NRP1O14786 923 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 GPR32O75388 356 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 BEST1O76090 585 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 NCAM1P13591 858 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 DARSP14868 501 aaKnown RBP16.38■□□□□ 0.21
SHMT2-231ENST00000557433 IL10P22301 178 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 ARNTP27540 789 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 ATP6V0D1P61421 351 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 PRKCQQ04759 706 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 CTBP1Q13363 440 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 Q3C1V9 767 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 CIB1Q99828 191 aa16.38■□□□□ 0.21
SHMT2-231ENST00000557433 C9orf16Q9BUW7 83 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms