RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 MYBL2P10244 700 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 PABPC1P11940 636 aaKnown RBP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 TGM2P21980 687 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 RRM1P23921 792 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 CCR1P32246 355 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 NOS2P35228 1153 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 NUMBP49757 651 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 GABPB1Q06547 395 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 PTP4A2Q12974 167 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 CST6Q15828 149 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 IGFBP7Q16270 282 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 FSCBQ5H9T9 825 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 MPP7Q5T2T1 576 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 PLEKHA7Q6IQ23 1121 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 MMS22LQ6ZRQ5 1243 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 CHSY1Q86X52 802 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 KLHL7Q8IXQ5 586 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 AADATQ8N5Z0 425 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 FIBINQ8TAL6 211 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 WFIKKN2Q8TEU8 576 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 CAVIN3Q969G5 261 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 CCDC97Q96F63 343 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 BTN2A3PQ96KV6 586 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 PRICKLE1Q96MT3 831 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 MRPL47Q9HD33 250 aaKnown RBP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 SEPT3Q9UH03 358 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 SUN2Q9UH99 717 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 LCMT1Q9UIC8 334 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 SCML1Q9UN30 329 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 PCDHGA8Q9Y5G5 932 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 NBASA2RRP1 2371 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 GOLGA6L10A0A0M3HER8 536 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 F5H5T6 163 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 CASC3O15234 703 aaKnown RBP12.72□□□□□ -0.37
SHMT2-230ENST00000557427 FFAR2O15552 330 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 SPOPO43791 374 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 NOBOXO60393 691 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 IGLV3-25P01717 112 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 CALB1P05937 261 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 ATP5BP06576 529 aaKnown RBP12.72□□□□□ -0.37
SHMT2-230ENST00000557427 SLC2A3P11169 496 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 TFE3P19532 575 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-230ENST00000557427 TNNT3P45378 269 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-230ENST00000557427 CCR10P46092 362 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 GABRB2P47870 512 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 ADPRHP54922 357 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 EIF4EBP2Q13542 120 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-230ENST00000557427 CDH18Q13634 790 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 SLC45A4Q5BKX6 768 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 FAM102AQ5T9C2 384 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-230ENST00000557427 SEL1L2Q5TEA6 688 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 NAPEPLDQ6IQ20 393 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 SLC26A9Q7LBE3 791 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 MAATS1Q7Z4T9 603 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 CLEC14AQ86T13 490 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 XYLT1Q86Y38 959 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 ZDHHC17Q8IUH5 632 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 MMAAQ8IVH4 418 aaKnown RBP12.72□□□□□ -0.37
SHMT2-230ENST00000557427 AHI1Q8N157 1196 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 KRT35Q92764 455 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 APOLD1Q96LR9 279 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 ARHGAP9Q9BRR9 750 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 AP1M1Q9BXS5 423 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 SIK2Q9H0K1 926 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 EPB41L5Q9HCM4 733 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 ADAM22Q9P0K1 906 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 ANAPC7Q9UJX3 599 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 ATXN7L1Q9ULK2 861 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-230ENST00000557427 FZD4Q9ULV1 537 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 CA5BQ9Y2D0 317 aa12.72□□□□□ -0.37
SHMT2-230ENST00000557427 BLACEA4D250 179 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 ENO4A6NNW6 628 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 MYO1FO00160 1098 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 DAB1O75553 588 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 PROSCO94903 275 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 ITGB2P05107 769 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 GP1BAP07359 652 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 MMP8P22894 467 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 SLC8A1P32418 973 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 MAN1A1P33908 653 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 CSKP41240 450 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 SULT1E1P49888 294 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 RWDD2BP57060 319 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 GUCY2DQ02846 1103 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 CUL1Q13616 776 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 TGIF1Q15583 401 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 C9orf64Q5T6V5 341 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 USP53Q70EK8 1073 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 C14orf80Q86SX3 495 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 IQCHQ86VS3 1027 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 CIR1Q86X95 450 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-230ENST00000557427 GSPT2Q8IYD1 628 aaKnown RBP12.71□□□□□ -0.37
SHMT2-230ENST00000557427 OR14C36Q8NHC7 312 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 SGF29Q96ES7 293 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 BTBD6Q96KE9 485 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 LMLNQ96KR4 655 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 MRGPRX3Q96LB0 322 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 FAM129BQ96TA1 746 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms