RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 DOCK4Q8N1I0 1966 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 TRAV19A0A0A6YYK7 116 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 LOC285095A0A1B0GVY8 99 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 HMX2A2RU54 273 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 EME2A4GXA9 379 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 C2orf78A6NCI8 922 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 H3BNC9 293 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 UGT1A9O60656 530 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 DNAJC6O75061 913 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 HOXB8P17481 243 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 TPH1P17752 444 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 FOXN2P32314 431 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 OLIG2Q13516 323 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 POU6F1Q14863 301 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 KRT72Q14CN4 511 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 HSP90AA5PQ58FG0 334 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 FAM182AQ5T1J6 154 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 MPP7Q5T2T1 576 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 OR52E8Q6IFG1 317 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 ELMSAN1Q6PJG2 1045 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 ARHGAP22Q7Z5H3 698 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 TMCO2Q7Z6W1 182 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 UBE2Q1Q7Z7E8 422 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 TMEM150AQ86TG1 271 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 CIR1Q86X95 450 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 CPXM2Q8N436 756 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 KIF2BQ8N4N8 673 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 ZNF557Q8N988 423 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 KREMEN2Q8NCW0 462 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 ARRDC2Q8TBH0 407 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 SCG3Q8WXD2 468 aaKnown RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 AUTS2Q8WXX7 1259 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 PTPRN2Q92932 1015 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 USP13Q92995 863 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 RMDN2Q96LZ7 410 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 PRICKLE1Q96MT3 831 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 KLHL5Q96PQ7 755 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 ACE2Q9BYF1 805 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 MYLK2Q9H1R3 596 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 SUDS3Q9H7L9 328 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 UGT1A7Q9HAW7 530 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 UGT1A10Q9HAW8 530 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 UGT1A8Q9HAW9 530 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 IL21Q9HBE4 155 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 TRPC7Q9HCX4 862 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 TREX1Q9NSU2 369 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 SLC17A7Q9P2U7 560 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 STX18Q9P2W9 335 aaKnown RBP12.76□□□□□ -0.37
SHMT2-229ENST00000557348 DPP7Q9UHL4 492 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 TMCO1Q9UM00 188 aa12.76□□□□□ -0.37
SHMT2-229ENST00000557348 MYO18AQ92614 2054 aaKnown RBP12.75□□□□□ -0.37
SHMT2-229ENST00000557348 TPP1O14773 563 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 SLC7A4O43246 635 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 KLKB1P03952 638 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 ALDOAP04075 364 aaKnown RBP12.75□□□□□ -0.37
SHMT2-229ENST00000557348 C8AP07357 584 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 LINC00271P0C7V0 271 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 IRF1P10914 325 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 COL6A2P12110 1019 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 NMBRP28336 390 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 GABRR2P28476 465 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 HOXA9P31269 272 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 BMPR1AP36894 532 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 KPNA2P52292 529 aaKnown RBP12.75□□□□□ -0.37
SHMT2-229ENST00000557348 SLC34A1Q06495 639 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 CDK18Q07002 472 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 NSUN2Q08J23 767 aaKnown RBP eCLIP12.75□□□□□ -0.37
SHMT2-229ENST00000557348 PCSK7Q16549 785 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 TAF1BQ53T94 588 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-229ENST00000557348 CES3Q6UWW8 571 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 Q6ZNB5 142 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 HTR3DQ70Z44 454 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 ALDH16A1Q8IZ83 802 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 UNC5BQ8IZJ1 945 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 CFAP52Q8N1V2 620 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 SLC7A6OSQ96CW6 309 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-229ENST00000557348 ERP27Q96DN0 273 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 ZFRQ96KR1 1074 aaKnown RBP12.75□□□□□ -0.37
SHMT2-229ENST00000557348 GPR22Q99680 433 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 SEMA3CQ99985 751 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 SLC13A1Q9BZW2 595 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 RNF38Q9H0F5 515 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 MUC3BQ9H195 1237 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 ASAH2Q9NR71 780 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 SIRPGQ9P1W8 387 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 CIDEBQ9UHD4 219 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 ANGPTL2Q9UKU9 493 aa12.75□□□□□ -0.37
SHMT2-229ENST00000557348 NYNRINQ9P2P1 1898 aaKnown RBP12.75□□□□□ -0.37
SHMT2-229ENST00000557348 TLL1O43897 1013 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 H2AFYO75367 372 aaKnown RBP12.74□□□□□ -0.37
SHMT2-229ENST00000557348 NDST3O95803 873 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 MMP2P08253 660 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 ACVRL1P37023 503 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 RPS24P62847 133 aaKnown RBP12.74□□□□□ -0.37
SHMT2-229ENST00000557348 XIAPP98170 497 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 DSC2Q02487 901 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 SEPT6Q14141 434 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 CCDC6Q16204 474 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 LRRC23Q53EV4 343 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-229ENST00000557348 INO80DQ53TQ3 878 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms