RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CAMK1GQ96NX5 476 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 ELF4Q99607 663 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 WRAP53Q9BUR4 548 aaKnown RBP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 C1QTNF2Q9BXJ5 285 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 SLC17A9Q9BYT1 436 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 SLC32A1Q9H598 525 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 PCDH12Q9NPG4 1184 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 DDX56Q9NY93 547 aaKnown RBP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 DTLQ9NZJ0 730 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 PCDHGB2Q9Y5G2 931 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 TRPM6Q9BX84 2022 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 A0A1B0GTQ1 180 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 TRAFD1O14545 582 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 PAK4O96013 591 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 PRKCGP05129 697 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 MMP12P39900 470 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 MARCKSL1P49006 195 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 SUOXP51687 545 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 SLC10A2Q12908 348 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 SHBQ15464 509 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 IFI16Q16666 785 aaKnown RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 ST3GAL2Q16842 350 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 N4BP2L1Q5TBK1 243 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 SLC9A4Q6AI14 798 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 TIGD7Q6NT04 549 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 TEX26Q8N6G2 289 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 OR13H1Q8NG92 308 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 TPCN2Q8NHX9 752 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 CXorf40AQ8TE69 158 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 MAML1Q92585 1016 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 HDAC11Q96DB2 347 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 ZNF830Q96NB3 372 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 NUDCD1Q96RS6 583 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 KLF6Q99612 283 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-219ENST00000555563 LACRTQ9GZZ8 138 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 NT5MQ9NPB1 228 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 SCUBE2Q9NQ36 999 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 ATP8A1Q9Y2Q0 1164 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 ALG6Q9Y672 507 aa13.84□□□□□ -0.19
SHMT2-219ENST00000555563 SPAARA0A1B0GVQ0 90 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 A6NNZ2 444 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 APOL1O14791 398 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 FLRT2O43155 660 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 PCDHGA12O60330 932 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 DFNA5O60443 496 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 MMP20O60882 483 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 SOCS5O75159 536 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 THEGLP0DJG4 465 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 MX2P20592 715 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 CCNCP24863 283 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 VAV2P52735 878 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 FAM193AP78312 1265 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 SEMG2Q02383 582 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 ELP6Q0PNE2 266 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 SGCGQ13326 291 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 HNRNPDQ14103 355 aaKnown RBP13.83□□□□□ -0.2
SHMT2-219ENST00000555563 TMEM52BQ4KMG9 183 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 ODF2Q5BJF6 829 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 ERAP2Q6P179 960 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 MFSD7Q6UXD7 560 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 KYAT3Q6YP21 454 aaKnown RBP13.83□□□□□ -0.2
SHMT2-219ENST00000555563 KDM7AQ6ZMT4 941 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 PTAR1Q7Z6K3 402 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-219ENST00000555563 ABI3BPQ7Z7G0 1075 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 DAAM2Q86T65 1068 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 RFX6Q8HWS3 928 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 PAF1Q8N7H5 531 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 SETD7Q8WTS6 366 aaKnown RBP13.83□□□□□ -0.2
SHMT2-219ENST00000555563 KLHDC7BQ96G42 594 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 TSGA13Q96PP4 275 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 DESI2Q9BSY9 194 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 NOD2Q9HC29 1040 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 PCOLCE2Q9UKZ9 415 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 BTBD3Q9Y2F9 522 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 HEY1Q9Y5J3 304 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 DUSP10Q9Y6W6 482 aa13.83□□□□□ -0.2
SHMT2-219ENST00000555563 CACNA1BQ00975 2339 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 LRRK1Q38SD2 2015 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-219ENST00000555563 POM121BA6NF01 834 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 BTNL10A8MVZ5 291 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 RIOK3O14730 519 aaKnown RBP13.82□□□□□ -0.2
SHMT2-219ENST00000555563 MATN3O15232 486 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 HTRA2O43464 458 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-219ENST00000555563 MAGEC1O60732 1142 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 CBFA2T3O75081 653 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 TM7SF2O76062 418 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 EPHA8P29322 1005 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-219ENST00000555563 IGFALSP35858 605 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 CDKN2BP42772 138 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 DYNLT1P63172 113 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 SIM1P81133 766 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-219ENST00000555563 TRAF2Q12933 501 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 RALGDSQ12967 914 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 TAZQ16635 292 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 NPNTQ6UXI9 565 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 DBX2Q6ZNG2 339 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 KIAA1328Q86T90 577 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 GATAD2AQ86YP4 633 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms