RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 GPR78Q96P69 363 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 ELAC2Q9BQ52 826 aaKnown RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 ZBED2Q9BTP6 218 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 C20orf27Q9GZN8 174 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 SMG9Q9H0W8 520 aaKnown RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 MFSD1Q9H3U5 465 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 ASAH2Q9NR71 780 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 CFAP97Q9P2B7 532 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 PRKAG2Q9UGJ0 569 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 VPS51Q9UID3 782 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 INTS6Q9UL03 887 aaKnown RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 SPO11Q9Y5K1 396 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 NUMBLQ9Y6R0 609 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 TRANK1O15050 2925 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 GOLGA8TH3BQL2 631 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 EBAG9O00559 213 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 TRAFD1O14545 582 aaPredicted RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 PLIN3O60664 434 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 GLRA3O75311 464 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 BPGMP07738 259 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 HNRNPA1P09651 372 aaKnown RBP eCLIP8.97□□□□□ -0.97
TDP1-210ENST00000554976 FGF3P11487 239 aaPredicted RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 CES1P23141 567 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 WEE1P30291 646 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 SPRP35270 261 aaPredicted RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 CSNK1DP48730 415 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 ERVK-21P61565 698 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 SMAD1Q15797 465 aaKnown RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 TAF12Q16514 161 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 HSF5Q4G112 596 aaPredicted RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 PPM1LQ5SGD2 360 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 IL31Q6EBC2 164 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 ASTLQ6HA08 431 aaPredicted RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 CMC1Q7Z7K0 106 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 CACNA2D3Q8IZS8 1091 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 SLC25A41Q8N5S1 370 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 MDGA1Q8NFP4 955 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 GRAMD1AQ96CP6 724 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 CORO1BQ9BR76 489 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 MECRQ9BV79 373 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 CINPQ9BW66 212 aaPredicted RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 FAM107BQ9H098 131 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 MANSC1Q9H8J5 431 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 USP15Q9Y4E8 981 aaPredicted RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 KCTD3Q9Y597 815 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 E2F8A0AVK6 867 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 G3V2L1 256 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 SCAMP3O14828 347 aaKnown RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 AURKAO14965 403 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 SLC7A4O43246 635 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 TIMM44O43615 452 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 VAPBO95292 243 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 NDST3O95803 873 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 MPOP05164 745 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 GSTA1P08263 222 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 VIMP08670 466 aaKnown RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 SLC35E2BP0CK96 405 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 BMP1P13497 986 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 ARRB2P32121 409 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 HADHAP40939 763 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 OCRLQ01968 901 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 TRAF2Q12933 501 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 SEMA3AQ14563 771 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 ZNF235Q14590 738 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 TEAD2Q15562 447 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 CNGA3Q16281 694 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 ZNF789Q5FWF6 425 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 RALGPS1Q5JS13 557 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 KDELC2Q7Z4H8 507 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 SPATA21Q7Z572 469 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 ADGRD2Q7Z7M1 963 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 CEP97Q8IW35 865 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 CCDC197Q8NCU1 140 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 NSMCE1Q8WV22 266 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 DYDC1Q8WWB3 177 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 RMDN2Q96LZ7 410 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 NSRP1Q9H0G5 558 aaKnown RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 CAB39LQ9H9S4 337 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 TMEM216Q9P0N5 145 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 DCDC2Q9UHG0 476 aa8.97□□□□□ -0.97
TDP1-210ENST00000554976 YBX2Q9Y2T7 364 aaKnown RBP8.97□□□□□ -0.97
TDP1-210ENST00000554976 REV3LO60673 3130 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 GRXCR1A8MXD5 290 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 TGDSO95455 350 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 RHOP08100 348 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 BGNP21810 368 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 CD70P32970 193 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 NUMBP49757 651 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 LMAN2Q12907 356 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 GALNT3Q14435 633 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 DLG2Q15700 870 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 CDKN3Q16667 212 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 MPPE1Q53F39 396 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 HHATQ5VTY9 493 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 KIAA0408Q6ZU52 694 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 CILP2Q8IUL8 1156 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 CENPLQ8N0S6 344 aaPredicted RBP8.96□□□□□ -0.97
TDP1-210ENST00000554976 CARNMT1Q8N4J0 409 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 VN1R2Q8NFZ6 395 aa8.96□□□□□ -0.97
TDP1-210ENST00000554976 BRSK1Q8TDC3 778 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms